[med-svn] [Git][med-team/metabat][master] 3 commits: lintian-override, hardening, perl path
Andreas Tille
gitlab at salsa.debian.org
Sun May 31 22:08:00 BST 2020
Andreas Tille pushed to branch master at Debian Med / metabat
Commits:
e410d225 by Andreas Tille at 2020-05-31T22:18:58+02:00
lintian-override, hardening, perl path
- - - - -
a5e9170f by Andreas Tille at 2020-05-31T22:49:31+02:00
runMetaBat.sh
- - - - -
26ab6f19 by Andreas Tille at 2020-05-31T23:07:41+02:00
Add autopkgtest
- - - - -
14 changed files:
- + debian/README.test
- + debian/createmanpages
- + debian/docs
- + debian/examples
- + debian/lintian-overrides
- + debian/man/contigOverlaps.1
- + debian/man/jgi_summarize_bam_contig_depths.1
- + debian/man/metabat1.1
- + debian/man/metabat2.1
- + debian/man/runMetaBat.sh.1
- + debian/manpages
- debian/rules
- + debian/tests/control
- + debian/tests/run-unit-test
Changes:
=====================================
debian/README.test
=====================================
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+
+ sh run-unit-test
+
+in order to confirm its integrity.
=====================================
debian/createmanpages
=====================================
@@ -0,0 +1,53 @@
+#!/bin/sh
+MANDIR=debian/man
+mkdir -p $MANDIR
+
+VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
+NAME=`grep "^Description:" debian/control | sed 's/^Description: *//' | head -n1`
+PROGNAME=`grep "^Package:" debian/control | sed 's/^Package: *//' | head -n1`
+
+AUTHOR=".SH AUTHOR\n \
+This manpage was written by $DEBFULLNAME for the Debian distribution and\n \
+can be used for any other usage of the program.\
+"
+
+# If program name is different from package name or title should be
+# different from package short description change this here
+progname=contigOverlaps
+help2man --no-info --no-discard-stderr --help-option=" --help" \
+ --name="ContigOverlaps nosha" \
+ --version-string="$VERSION" ${progname} > $MANDIR/${progname}.1
+echo $AUTHOR >> $MANDIR/${progname}.1
+
+progname=jgi_summarize_bam_contig_depths
+help2man --no-info --no-discard-stderr --help-option=" --help" \
+ --name="jgi_summarize_bam_contig_depths nosha" \
+ --version-string="$VERSION" ${progname} > $MANDIR/${progname}.1
+echo $AUTHOR >> $MANDIR/${progname}.1
+
+progname=metabat1
+help2man --no-info --no-discard-stderr --help-option=" --help" \
+ --name="MetaBAT: Metagenome Binning based on Abundance and Tetranucleotide frequency (version 1)" \
+ --version-string="$VERSION" ${progname} > $MANDIR/${progname}.1
+echo $AUTHOR >> $MANDIR/${progname}.1
+
+progname=metabat2
+help2man --no-info --no-discard-stderr --help-option=" --help" \
+ --name="MetaBAT: Metagenome Binning based on Abundance and Tetranucleotide frequency (version 2)" \
+ --version-string="$VERSION" ${progname} > $MANDIR/${progname}.1
+echo $AUTHOR >> $MANDIR/${progname}.1
+
+
+progname=runMetaBat.sh
+help2man --no-info --no-discard-stderr --help-option=" --help" \
+ --name="Wrapper for MetaBAT" \
+ --version-string="$VERSION" ${progname} > $MANDIR/${progname}.1
+echo $AUTHOR >> $MANDIR/${progname}.1
+
+echo "$MANDIR/*.1" > debian/manpages
+
+cat <<EOT
+Please enhance the help2man output.
+The following web page might be helpful in doing so:
+ http://liw.fi/manpages/
+EOT
=====================================
debian/docs
=====================================
@@ -0,0 +1,3 @@
+debian/README.test
+debian/tests/run-unit-test
+README*
=====================================
debian/examples
=====================================
@@ -0,0 +1 @@
+test/contigs*
=====================================
debian/lintian-overrides
=====================================
@@ -0,0 +1,2 @@
+# see https://lists.debian.org/debian-med/2018/06/msg00043.html
+metabat: script-with-language-extension usr/bin/*.*
=====================================
debian/man/contigOverlaps.1
=====================================
@@ -0,0 +1,17 @@
+.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.15.
+.TH CONTIGOVERLAPS "1" "May 2020" "contigOverlaps 2.15" "User Commands"
+.SH NAME
+contigOverlaps \- ContigOverlaps nosha
+.SH SYNOPSIS
+.B contigOverlaps
+\fI\,<options> firstAssemblyBams.fofn secondAssemblyBams.fofn \/\fR[ ... ]
+.SH OPTIONS
+.TP
+\fB\-\-help\fR
+print out this message
+.TP
+\fB\-\-percentIdentity\fR
+arg The minimum end\-to\-end % identity of qualifying reads (default: 97)
+.SH AUTHOR
+ This manpage was written by Andreas Tille for the Debian distribution and
+ can be used for any other usage of the program.
=====================================
debian/man/jgi_summarize_bam_contig_depths.1
=====================================
@@ -0,0 +1,72 @@
+.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.15.
+.TH JGI_SUMMARIZE_BAM_CONTIG_DEPTHS "1" "May 2020" "jgi_summarize_bam_contig_depths 2.15" "User Commands"
+.SH NAME
+jgi_summarize_bam_contig_depths \- jgi_summarize_bam_contig_depths nosha
+.SH SYNOPSIS
+.B jgi_summarize_bam_contig_depths
+\fI\,<options> sortedBam1 \/\fR[ \fI\,sortedBam2 \/\fR...]
+.SH OPTIONS
+.TP
+\fB\-\-outputDepth\fR
+arg The file to put the contig by bam depth matrix (default: STDOUT)
+.TP
+\fB\-\-percentIdentity\fR
+arg The minimum end\-to\-end % identity of qualifying reads (default: 97)
+.TP
+\fB\-\-pairedContigs\fR
+arg The file to output the sparse matrix of contigs which paired reads span (default: none)
+.TP
+\fB\-\-unmappedFastq\fR
+arg The prefix to output unmapped reads from each bam file suffixed by 'bamfile.bam.fastq.gz'
+.TP
+\fB\-\-noIntraDepthVariance\fR
+Do not include variance from mean depth along the contig
+.TP
+\fB\-\-showDepth\fR
+Output a .depth file per bam for each contig base
+.TP
+\fB\-\-minMapQual\fR
+arg The minimum mapping quality necessary to count the read as mapped (default: 0)
+.TP
+\fB\-\-weightMapQual\fR
+arg Weight per\-base depth based on the MQ of the read (i.e uniqueness) (default: 0.0 (disabled))
+.TP
+\fB\-\-includeEdgeBases\fR
+When calculating depth & variance, include the 1\-readlength edges (off by default)
+.TP
+\fB\-\-maxEdgeBases\fR
+When calculating depth & variance, and not \fB\-\-includeEdgeBases\fR, the maximum length (default:75)
+.TP
+\fB\-\-referenceFasta\fR
+arg The reference file. (It must be the same fasta that bams used)
+.PP
+Options that require a \fB\-\-referenceFasta\fR
+.TP
+\fB\-\-outputGC\fR
+arg The file to print the gc coverage histogram
+.TP
+\fB\-\-gcWindow\fR
+arg The sliding window size for GC calculations
+.TP
+\fB\-\-outputReadStats\fR
+arg The file to print the per read statistics
+.TP
+\fB\-\-outputKmers\fR
+arg The file to print the perfect kmer counts
+.PP
+Options to control shredding contigs that are under represented by the reads
+.TP
+\fB\-\-shredLength\fR
+arg The maximum length of the shreds
+.TP
+\fB\-\-shredDepth\fR
+arg The depth to generate overlapping shreds
+.TP
+\fB\-\-minContigLength\fR
+arg The mimimum length of contig to include for mapping and shredding
+.TP
+\fB\-\-minContigDepth\fR
+arg The minimum depth along contig at which to break the contig
+.SH AUTHOR
+ This manpage was written by Andreas Tille for the Debian distribution and
+ can be used for any other usage of the program.
=====================================
debian/man/metabat1.1
=====================================
@@ -0,0 +1,165 @@
+.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.15.
+.TH METABAT1 "1" "May 2020" "metabat1 2.15" "User Commands"
+.SH NAME
+metabat1 \- MetaBAT: Metagenome Binning based on Abundance and Tetranucleotide frequency (version 1)
+.SH DESCRIPTION
+MetaBAT: Metagenome Binning based on Abundance and Tetranucleotide frequency (version 1)
+by Don Kang (ddkang at lbl.gov), Jeff Froula, Rob Egan, and Zhong Wang (zhongwang at lbl.gov)
+.SH OPTIONS
+.TP
+\fB\-h\fR [ \fB\-\-help\fR ]
+produce help message
+.TP
+\fB\-i\fR [ \fB\-\-inFile\fR ] arg
+Contigs in (gzipped) fasta file format [Mandatory]
+.TP
+\fB\-o\fR [ \fB\-\-outFile\fR ] arg
+Base file name for each bin. The default output is fasta format. Use \fB\-l\fR
+option to output only contig names [Mandatory]
+.TP
+\fB\-a\fR [ \fB\-\-abdFile\fR ] arg
+A file having mean and variance of base coverage depth (tab delimited;
+the first column should be contig names, and the first row will be
+considered as the header and be skipped) [Optional]
+.TP
+\fB\-\-cvExt\fR
+When a coverage file without variance (from third party tools) is used
+instead of abdFile from jgi_summarize_bam_contig_depths
+.TP
+\fB\-p\fR [ \fB\-\-pairFile\fR ] arg
+A file having paired reads mapping information. Use it to increase
+sensitivity. (tab delimited; should have 3 columns of contig index
+(ordered by), its mate contig index, and supporting mean read coverage.
+The first row will be considered as the header and be skipped) [Optional]
+.TP
+\fB\-\-p1\fR arg (=0)
+Probability cutoff for bin seeding. It mainly controls the number of
+potential bins and their specificity. The higher, the more (specific)
+bins would be. (Percentage; Should be between 0 and 100)
+.TP
+\fB\-\-p2\fR arg (=0)
+Probability cutoff for secondary neighbors. It supports p1 and better be
+close to p1. (Percentage; Should be between 0 and 100)
+.TP
+\fB\-\-minProb\fR arg (=0)
+Minimum probability for binning consideration. It controls sensitivity.
+Usually it should be >= 75. (Percentage; Should be between 0 and 100)
+.TP
+\fB\-\-minBinned\fR arg (=0)
+Minimum proportion of already binned neighbors for one's membership
+inference. It contorls specificity. Usually it would be <= 50
+(Percentage; Should be between 0 and 100)
+.TP
+\fB\-\-verysensitive\fR
+For greater sensitivity, especially in a simple community. It is the
+shortcut for \fB\-\-p1\fR 90 \fB\-\-p2\fR 85 \fB\-\-pB\fR 20 \fB\-\-minProb\fR 75 \fB\-\-minBinned\fR 20
+\fB\-\-minCorr\fR 90
+.TP
+\fB\-\-sensitive\fR
+For better sensitivity [default]. It is the shortcut for \fB\-\-p1\fR 90 \fB\-\-p2\fR 90
+\fB\-\-pB\fR 20 \fB\-\-minProb\fR 80 \fB\-\-minBinned\fR 40 \fB\-\-minCorr\fR 92
+.TP
+\fB\-\-specific\fR
+For better specificity. Different from \fB\-\-sensitive\fR when using correlation
+binning or ensemble binning. It is the shortcut for \fB\-\-p1\fR 90 \fB\-\-p2\fR 90 \fB\-\-pB\fR
+30 \fB\-\-minProb\fR 80 \fB\-\-minBinned\fR 40 \fB\-\-minCorr\fR 96
+.TP
+\fB\-\-veryspecific\fR
+For greater specificity. No correlation binning for short contig
+recruiting. It is the shortcut for \fB\-\-p1\fR 90 \fB\-\-p2\fR 90 \fB\-\-pB\fR 40 \fB\-\-minProb\fR 80
+\fB\-\-minBinned\fR 40
+.TP
+\fB\-\-superspecific\fR
+For the best specificity. It is the shortcut for \fB\-\-p1\fR 95 \fB\-\-p2\fR 90 \fB\-\-pB\fR 50
+\fB\-\-minProb\fR 80 \fB\-\-minBinned\fR 20
+.TP
+\fB\-\-minCorr\fR arg (=0)
+Minimum pearson correlation coefficient for binning missed contigs to
+increase sensitivity (Helpful when there are many samples). Should be
+very high (>=90) to reduce contamination. (Percentage; Should be between
+0 and 100; 0 disables)
+.TP
+\fB\-\-minSamples\fR arg (=10)
+Minimum number of sample sizes for considering correlation based
+recruiting
+.TP
+\fB\-x\fR [ \fB\-\-minCV\fR ] arg (=1)
+Minimum mean coverage of a contig to consider for abundance distance
+calculation in each library
+.TP
+\fB\-\-minCVSum\fR arg (=2)
+Minimum total mean coverage of a contig (sum of all libraries) to
+consider for abundance distance calculation
+.HP
+\fB\-s\fR [ \fB\-\-minClsSize\fR ] arg (=200000) Minimum size of a bin to be considered as the output
+.TP
+\fB\-m\fR [ \fB\-\-minContig\fR ] arg (=2500)
+Minimum size of a contig to be considered for binning (should be >=1500;
+ideally >=2500). If # of samples >= minSamples, small contigs (>=1000)
+will be given a chance to be recruited to existing bins by default.
+.TP
+\fB\-\-minContigByCorr\fR arg (=1000)
+Minimum size of a contig to be considered for recruiting by pearson
+correlation coefficients (activated only if # of samples >= minSamples;
+disabled when minContigByCorr > minContig)
+.TP
+\fB\-t\fR [ \fB\-\-numThreads\fR ] arg (=0)
+Number of threads to use (0: use all cores)
+.TP
+\fB\-\-minShared\fR arg (=50)
+Percentage cutoff for merging fuzzy contigs
+.TP
+\fB\-\-fuzzy\fR
+Binning with fuzziness which assigns multiple memberships of a contig to
+bins (activated only with \fB\-\-pairFile\fR at the moment)
+.TP
+\fB\-l\fR [ \fB\-\-onlyLabel\fR ]
+Output only sequence labels as a list in a column without sequences
+.TP
+\fB\-S\fR [ \fB\-\-sumLowCV\fR ]
+If set, then every sample that falls below the minCV will be used in an
+aggregate sample
+.TP
+\fB\-V\fR [ \fB\-\-maxVarRatio\fR ] arg (=0)
+Ignore any contigs where variance / mean exceeds this ratio (0 disables)
+.TP
+\fB\-\-saveTNF\fR arg
+File to save (or load if exists) TNF matrix for each contig in input
+.TP
+\fB\-\-saveDistance\fR arg
+File to save (or load if exists) distance graph at lowest probability
+cutoff
+.TP
+\fB\-\-saveCls\fR
+Save cluster memberships as a matrix format
+.TP
+\fB\-\-unbinned\fR
+Generate [outFile].unbinned.fa file for unbinned contigs
+.TP
+\fB\-\-noBinOut\fR
+No bin output. Usually combined with \fB\-\-saveCls\fR to check only contig
+memberships
+.TP
+\fB\-B\fR [ \fB\-\-B\fR ] arg (=20)
+Number of bootstrapping for ensemble binning (Recommended to be >=20)
+.TP
+\fB\-\-pB\fR arg (=50)
+Proportion of shared membership in bootstrapping. Major control for
+sensitivity/specificity. The higher, the specific. (Percentage; Should be
+between 0 and 100)
+.TP
+\fB\-\-seed\fR arg (=0)
+For reproducibility in ensemble binning, though it might produce slightly
+different results. (0: use random seed)
+.TP
+\fB\-\-keep\fR
+Keep the intermediate files for later usage
+.TP
+\fB\-d\fR [ \fB\-\-debug\fR ]
+Debug output
+.TP
+\fB\-v\fR [ \fB\-\-verbose\fR ]
+Verbose output
+.SH AUTHOR
+ This manpage was written by Andreas Tille for the Debian distribution and
+ can be used for any other usage of the program.
=====================================
debian/man/metabat2.1
=====================================
@@ -0,0 +1,85 @@
+.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.15.
+.TH METABAT2 "1" "May 2020" "metabat2 2.15" "User Commands"
+.SH NAME
+metabat2 \- MetaBAT: Metagenome Binning based on Abundance and Tetranucleotide frequency (version 2)
+.SH DESCRIPTION
+MetaBAT: Metagenome Binning based on Abundance and Tetranucleotide frequency (version 2)
+by Don Kang (ddkang at lbl.gov), Feng Li, Jeff Froula, Rob Egan, and Zhong Wang (zhongwang at lbl.gov)
+.SH OPTIONS
+.TP
+\fB\-h\fR [ \fB\-\-help\fR ]
+produce help message
+.TP
+\fB\-i\fR [ \fB\-\-inFile\fR ] arg
+Contigs in (gzipped) fasta file format [Mandatory]
+.TP
+\fB\-o\fR [ \fB\-\-outFile\fR ] arg
+Base file name and path for each bin. The default output is fasta format..
+Use \fB\-l\fR option to output only contig names [Mandatory].
+.TP
+\fB\-a\fR [ \fB\-\-abdFile\fR ] arg
+A file having mean and variance of base coverage depth (tab delimited;
+the first column should be contig names, and the first row will be
+considered as the header and be skipped) [Optional].
+.TP
+\fB\-m\fR [ \fB\-\-minContig\fR ] arg (=2500)
+Minimum size of a contig for binning (should be >=1500).
+.TP
+\fB\-\-maxP\fR arg (=95)
+Percentage of 'good' contigs considered for binning decided by connection
+among contigs. The greater, the more sensitive.
+.TP
+\fB\-\-minS\fR arg (=60)
+Minimum score of a edge for binning (should be between 1 and 99). The
+greater, the more specific.
+.TP
+\fB\-\-maxEdges\fR arg (=200)
+Maximum number of edges per node. The greater, the more sensitive.
+.TP
+\fB\-\-pTNF\fR arg (=0)
+TNF probability cutoff for building TNF graph. Use it to skip the
+preparation step. (0: auto).
+.TP
+\fB\-\-noAdd\fR
+Turning off additional binning for lost or small contigs.
+.TP
+\fB\-\-cvExt\fR
+When a coverage file without variance (from third party tools) is used
+instead of abdFile from jgi_summarize_bam_contig_depths.
+.TP
+\fB\-x\fR [ \fB\-\-minCV\fR ] arg (=1)
+Minimum mean coverage of a contig in each library for binning.
+.TP
+\fB\-\-minCVSum\fR arg (=1)
+Minimum total effective mean coverage of a contig (sum of depth over
+minCV) for binning.
+.HP
+\fB\-s\fR [ \fB\-\-minClsSize\fR ] arg (=200000) Minimum size of a bin as the output.
+.TP
+\fB\-t\fR [ \fB\-\-numThreads\fR ] arg (=0)
+Number of threads to use (0: use all cores).
+.TP
+\fB\-l\fR [ \fB\-\-onlyLabel\fR ]
+Output only sequence labels as a list in a column without sequences.
+.TP
+\fB\-\-saveCls\fR
+Save cluster memberships as a matrix format
+.TP
+\fB\-\-unbinned\fR
+Generate [outFile].unbinned.fa file for unbinned contigs
+.TP
+\fB\-\-noBinOut\fR
+No bin output. Usually combined with \fB\-\-saveCls\fR to check only contig
+memberships
+.TP
+\fB\-\-seed\fR arg (=0)
+For exact reproducibility. (0: use random seed)
+.TP
+\fB\-d\fR [ \fB\-\-debug\fR ]
+Debug output
+.TP
+\fB\-v\fR [ \fB\-\-verbose\fR ]
+Verbose output
+.SH AUTHOR
+ This manpage was written by Andreas Tille for the Debian distribution and
+ can be used for any other usage of the program.
=====================================
debian/man/runMetaBat.sh.1
=====================================
@@ -0,0 +1,32 @@
+.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.15.
+.TH RUNMETABAT.SH "1" "May 2020" "runMetaBat.sh 2.15" "User Commands"
+.SH NAME
+runMetaBat.sh \- Wrapper for MetaBAT
+.SH DESCRIPTION
+.B
+runMetaBat.sh
+\fI <select metabat options> assembly.fa sample1.bam [ sample2.bam ...]\fR
+.SH OPTIONS
+You can specify any metabat options EXCEPT:
+.HP
+\fB\-i\fR \fB\-\-inFile\fR
+.HP
+\fB\-o\fR \fB\-\-outFile\fR
+.HP
+\fB\-a\fR \fB\-\-abdFile\fR
+.PP
+Also for depth calculations stage only, you can set the following environmental variables:
+.TP
+PCTID=97
+\fB\-\-\fR reads below this threshold will be discarded
+.TP
+BADMAP=0
+\fB\-\-\fR output the discarded reads to a sub directory
+.TP
+MINDEPTH=1.0
+\fB\-\-\fR require contigs to have this minimum depth to be output
+.PP
+For full metabat options: metabat2 \fB\-h\fR
+.SH AUTHOR
+ This manpage was written by Andreas Tille for the Debian distribution and
+ can be used for any other usage of the program.
=====================================
debian/manpages
=====================================
@@ -0,0 +1 @@
+debian/man/*.1
=====================================
debian/rules
=====================================
@@ -4,18 +4,8 @@
export LC_ALL=C.UTF-8
include /usr/share/dpkg/default.mk
-# this provides:
-# DEB_SOURCE: the source package name
-# DEB_VERSION: the full version of the package (epoch + upstream vers. + revision)
-# DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision
-# DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch
-# DEB_VERSION_UPSTREAM: the package's upstream version
-# DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog
-# SOURCE_DATE_EPOCH: the source release date as seconds since the epoch, as
-# specified by <https://reproducible-builds.org/specs/source-date-epoch/>
-# for hardening you might like to uncomment this:
-# export DEB_BUILD_MAINT_OPTIONS=hardening=+all
+export DEB_BUILD_MAINT_OPTIONS=hardening=+all
%:
dh $@
@@ -25,3 +15,9 @@ ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
cp -a test/contigs_depth.txt obj-$(DEB_BUILD_GNU_TYPE)
dh_auto_test
endif
+
+override_dh_install:
+ dh_install
+ for perlscript in `grep -l '#!/usr/bin/env \+perl' debian/*/usr/bin/*` ; do \
+ sed -i '1s+#!/usr/bin/env perl+#!/usr/bin/perl+' $${perlscript} ; \
+ done
=====================================
debian/tests/control
=====================================
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr
=====================================
debian/tests/run-unit-test
=====================================
@@ -0,0 +1,18 @@
+#!/bin/bash
+set -e
+
+pkg=metabat
+
+export LC_ALL=C.UTF-8
+if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
+ AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
+ trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
+
+cd "${AUTOPKGTEST_TMP}"
+
+jgi_summarize_bam_contig_depths --referenceFasta contigs.fa --outputDepth contigs_depth.txt contigs-1000.fastq.bam
+metabat1 --inFile contigs.fa --abdFile contigs_depth.txt --outFile contigs_bins -v
+metabat2 --inFile contigs.fa --abdFile contigs_depth.txt --outFile contigs_bins -v
View it on GitLab: https://salsa.debian.org/med-team/metabat/-/compare/0f9d3f1dd47fde4a80bf0c512aa2355666c847be...26ab6f194d91d6d1ee75bcd7dcab1d14c6426fdb
--
View it on GitLab: https://salsa.debian.org/med-team/metabat/-/compare/0f9d3f1dd47fde4a80bf0c512aa2355666c847be...26ab6f194d91d6d1ee75bcd7dcab1d14c6426fdb
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