Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
5d022ec1 by Andreas Tille at 2020-11-02T13:51:49+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,60 +1,58 @@
-Last-Update: Mon, 02 Nov 2020 01:42:03 +0000
+Last-Update: Mon, 02 Nov 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 176 | {covid-19,imaging} |
- orthanc | 95 | {practice,imaging,covid-19} |
- orthanc-wsi | 48 | {practice,covid-19,his,oncology,imaging,laboratory} |
- gdcm | 37 | {imaging-dev} |
+ dcmtk | 174 | {covid-19,imaging} |
+ orthanc | 93 | {practice,imaging,covid-19} |
+ orthanc-wsi | 46 | {practice,covid-19,his,oncology,imaging,laboratory} |
htsjdk | 37 | {bio-dev} |
dicomscope | 36 | {imaging} |
- dicom3tools | 35 | {imaging} |
+ gdcm | 36 | {imaging-dev} |
+ dicom3tools | 33 | {imaging} |
dcm2niix | 23 | {imaging} |
- gdcm | 20 | {imaging,covid-19} |
+ gdcm | 19 | {imaging,covid-19} |
gnumed-server | 17 | {practice,covid-19} |
- biosig | 16 | {imaging,physics} |
- gdcm | 15 | {imaging-dev} |
+ biosig | 15 | {imaging,physics} |
minc-tools | 15 | {imaging} |
- ngs-sdk | 15 | {bio-dev} |
pixelmed | 15 | {imaging} |
+ gdcm | 14 | {imaging-dev} |
invesalius | 14 | {imaging} |
+ ngs-sdk | 14 | {bio-dev} |
nifticlib | 14 | {imaging} |
- king | 12 | {imaging,typesetting} |
+ king | 11 | {imaging,typesetting} |
nifticlib | 11 | {imaging-dev} |
- openslide | 11 | {imaging} |
plastimatch | 11 | {imaging} |
- adun.app | 10 | {bio} |
- insighttoolkit4 | 10 | {imaging-dev} |
- ngs-sdk | 10 | {bio-dev} |
- vtk-dicom | 10 | {imaging} |
- dicompyler | 9 | {oncology} |
+ vtk-dicom | 11 | {imaging} |
+ openslide | 10 | {imaging} |
+ adun.app | 9 | {bio} |
+ insighttoolkit4 | 9 | {imaging-dev} |
librg-utils-perl | 9 | {bio} |
- obitools | 9 | {bio} |
+ ngs-sdk | 9 | {bio-dev} |
+ dicompyler | 8 | {oncology} |
melting | 8 | {bio,cloud} |
- orthanc-webviewer | 7 | {imaging} |
+ obitools | 8 | {bio} |
staden | 7 | {bio} |
- biojava-live | 6 | {bio-dev} |
- biomaj3-cli | 6 | {cloud} |
ea-utils | 6 | {bio} |
multiqc | 6 | {covid-19,bio} |
ngs-sdk | 6 | {bio-dev} |
+ orthanc-webviewer | 6 | {imaging} |
predictprotein | 6 | {bio} |
pymia | 6 | {imaging-dev} |
treeview | 6 | {bio,bio-phylogeny} |
bart-view | 5 | {imaging} |
+ biojava-live | 5 | {bio-dev} |
+ biomaj3-cli | 5 | {cloud} |
fastlink | 5 | {cloud,bio} |
jebl2 | 5 | {bio-dev} |
lagan | 5 | {bio} |
libminc | 5 | {imaging-dev} |
mipe | 5 | {cloud,bio} |
- orthanc-dicomweb | 5 | {covid-19,imaging} |
salmon | 5 | {bio,covid-19} |
sibsim4 | 5 | {bio,cloud} |
stacks | 5 | {bio} |
alter-sequence-alignment | 4 | {bio} |
anfo | 4 | {bio,cloud} |
assemblytics | 4 | {bio} |
- biomaj3-daemon | 4 | {bio} |
bio-tradis | 4 | {bio-dev,bio} |
brig | 4 | {bio} |
clonalorigin | 4 | {bio} |
@@ -68,7 +66,9 @@ Last-Update: Mon, 02 Nov 2020 01:42:03 +0000
jellyfish1 | 4 | {bio} |
lamarc | 4 | {bio} |
libncl | 4 | {bio} |
+ libsbml | 4 | {bio-dev} |
mrs | 4 | {bio} |
+ orthanc-dicomweb | 4 | {covid-19,imaging} |
phast | 4 | {bio} |
phybin | 4 | {bio} |
phyutility | 4 | {cloud,bio} |
@@ -85,6 +85,7 @@ Last-Update: Mon, 02 Nov 2020 01:42:03 +0000
arden | 3 | {bio,cloud} |
bamkit | 3 | {covid-19,bio} |
beast-mcmc | 3 | {bio-phylogeny,bio} |
+ biomaj3-daemon | 3 | {bio} |
bitseq | 3 | {bio} |
busco | 3 | {bio,covid-19} |
clonalframeml | 3 | {covid-19,bio} |
@@ -95,15 +96,10 @@ Last-Update: Mon, 02 Nov 2020 01:42:03 +0000
getdata | 3 | {bio} |
ghmm | 3 | {bio} |
hinge | 3 | {bio} |
- libdivsufsort | 3 | {bio-dev} |
- libsbml | 3 | {bio-dev} |
- mauve-aligner | 3 | {bio} |
mhap | 3 | {bio,bio-ngs} |
microbegps | 3 | {bio} |
murasaki | 3 | {bio} |
neobio | 3 | {bio,cloud} |
- orthanc-mysql | 3 | {imaging} |
- orthanc-postgresql | 3 | {imaging} |
paraclu | 3 | {cloud,bio} |
pbdagcon | 3 | {bio} |
perm | 3 | {cloud,bio} |
@@ -132,9 +128,13 @@ Last-Update: Mon, 02 Nov 2020 01:42:03 +0000
ipig | 2 | {bio} |
jmodeltest | 2 | {bio,bio-phylogeny} |
kmerresistance | 2 | {bio} |
+ libdivsufsort | 2 | {bio-dev} |
libpal-java | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
logol | 2 | {bio} |
+ mauve-aligner | 2 | {bio} |
+ orthanc-mysql | 2 | {imaging} |
+ orthanc-postgresql | 2 | {imaging} |
oscar | 2 | {data,practice,tools} |
pilercr | 2 | {bio} |
proalign | 2 | {bio,bio-phylogeny} |
@@ -144,6 +144,7 @@ Last-Update: Mon, 02 Nov 2020 01:42:03 +0000
rdp-classifier | 2 | {bio} |
sga | 2 | {bio} |
skesa | 2 | {bio} |
+ srf | 2 | {bio-dev} |
stringtie | 2 | {covid-19,bio} |
trace2dbest | 2 | {bio} |
tvc | 2 | {bio} |
@@ -157,11 +158,13 @@ Last-Update: Mon, 02 Nov 2020 01:42:03 +0000
embassy-phylip | 1 | {bio,cloud} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
+ libmuscle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
lighter | 1 | {covid-19,bio} |
metaphlan2 | 1 | {bio} |
nanosv | 1 | {bio,covid-19} |
nutsqlite | 1 | {tools} |
+ opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
plasmidid | 1 | {covid-19,bio} |
@@ -170,10 +173,8 @@ Last-Update: Mon, 02 Nov 2020 01:42:03 +0000
samtools-legacy | 1 | {bio-dev} |
seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
- simpleitk | 1 | {imaging-dev} |
skewer | 1 | {bio} |
spaln | 1 | {bio,covid-19} |
- srf | 1 | {bio-dev} |
thesias | 1 | {covid-19,bio} |
tophat-recondition | 1 | {bio,covid-19} |
varscan | 1 | {covid-19,bio} |
@@ -210,7 +211,6 @@ Last-Update: Mon, 02 Nov 2020 01:42:03 +0000
libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
- libmuscle | 0 | {bio-dev} |
libncl | 0 | {bio-dev} |
libpsortb | 0 | {bio-dev} |
libqes | 0 | {bio-dev} |
@@ -224,7 +224,6 @@ Last-Update: Mon, 02 Nov 2020 01:42:03 +0000
murasaki | 0 | {bio} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
- opencfu | 0 | {laboratory} |
openslide | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
@@ -245,5 +244,5 @@ Last-Update: Mon, 02 Nov 2020 01:42:03 +0000
orthanc-python | -1 | {covid-19} |
shovill | -1 | {bio,covid-19} |
svim | -1 | {bio} |
-(273 rows)
+(272 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5d022ec110ae305eb0875488b8e173694abd3074
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5d022ec110ae305eb0875488b8e173694abd3074
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20201102/8f194d82/attachment-0001.html>