[med-svn] [Git][med-team/python-pairix][master] 4 commits: Fix missing copyright statements

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / python-pairix


Commits:
aa926c7c by Andreas Tille at 2020-11-02T21:20:46+01:00
Fix missing copyright statements

- - - - -
b897e47c by Andreas Tille at 2020-11-02T21:21:30+01:00
Fix binary package name of examples according to ftpmaster advise

- - - - -
0ab67b2d by Andreas Tille at 2020-11-02T21:47:26+01:00
Fix installation

- - - - -
727c61fa by Andreas Tille at 2020-11-02T22:23:45+01:00
Its to hard to preserve all the gz compressed versus non-gz compressed files and restore these after dh_compress has done its job.  Thus create a tar archive and unpack it later

- - - - -


6 changed files:

- debian/control
- debian/copyright
- + debian/python-pairix-examples.install
- − debian/python3-pairix-examples.install
- debian/rules
- debian/tests/run-unit-test


Changes:

=====================================
debian/control
=====================================
@@ -38,7 +38,7 @@ Description: 1D/2D indexing and querying with a pair of genomic coordinates
  uses it to access the file from a relevant position by taking advantage
  of bgzf compression, allowing for a fast query on large files.
 
-Package: python3-pairix-examples
+Package: python-pairix-examples
 Architecture: all
 Depends: ${misc:Depends}
 Enhances: python3-pairix


=====================================
debian/copyright
=====================================
@@ -7,11 +7,18 @@ Copyright: 2016 Soo Lee
            2008-2009 Genome Research Ltd (GRL)
 License: MIT
 
-Files: src/bgzf.c
+Files: src/bgzf.*
+       src/bgzip.c
+       src/knetfile.c
+       src/ksort.h
 Copyright: 2008 Broad Institute / Massachusetts Institute of Technology
            2011 Attractive Chaos <attractor at live.co.uk>
 License: MIT
 
+Files: src/pairixmodule.c
+Copyright: 2011 Seoul National University
+License: MIT
+
 Files: src/pairix.h
 Copyright:  2009 Genome Research Ltd (GRL), 2010 Broad Institute
 License: MIT


=====================================
debian/python-pairix-examples.install
=====================================
@@ -0,0 +1,3 @@
+test		usr/share/doc/python3-pairix/examples
+samples.tar.xz	usr/share/doc/python3-pairix/examples
+VERSION.txt	usr/share/doc/python3-pairix/examples


=====================================
debian/python3-pairix-examples.install deleted
=====================================
@@ -1 +0,0 @@
-test	usr/share/doc/python3-pairix/examples


=====================================
debian/rules
=====================================
@@ -9,10 +9,8 @@ export PYBUILD_BEFORE_TEST=cp -a $(CURDIR)/samples {build_dir}; cp -a $(CURDIR)/
 %:
 	dh $@ --with python3 --buildsystem=pybuild
 
-override_dh_installexamples:
-	dh_installexamples
-	mkdir -p debian/python3-$(PYBUILD_NAME)-examples/usr/share/doc/python3-$(PYBUILD_NAME)/examples
-	mv debian/python3-$(PYBUILD_NAME)/usr/lib/python`py3versions -d -v`/dist-packages/samples debian/python3-$(PYBUILD_NAME)-examples/usr/share/doc/python3-$(PYBUILD_NAME)/examples
-	cd debian/python3-$(PYBUILD_NAME)-examples/usr/share/doc/python3-$(PYBUILD_NAME)/examples && tar caf samples.tar.xz samples && rm -rf samples
-	mv debian/python3-$(PYBUILD_NAME)/usr/lib/python`py3versions -d -v`/dist-packages/VERSION.txt debian/python3-$(PYBUILD_NAME)-examples/usr/share/doc/python3-$(PYBUILD_NAME)/examples
-	find debian -name VERSION.txt -delete
+override_dh_install:
+	tar caf samples.tar.xz samples
+	dh_install
+	find debian/python3-$(PYBUILD_NAME)/usr/lib -name samples -type d | xargs rm -rf
+	find debian/*/usr/lib -name VERSION.txt -delete


=====================================
debian/tests/run-unit-test
=====================================
@@ -6,7 +6,7 @@ pkg=python3-pairix
 export LC_ALL=C.UTF-8
 if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
   AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
-  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
+#  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
 fi
 
 cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"



View it on GitLab: https://salsa.debian.org/med-team/python-pairix/-/compare/ee0a6d59642417f26d7a95aaba45781b9287da2d...727c61fab22830f3d665c286b1e9220b02b1f39c

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-pairix/-/compare/ee0a6d59642417f26d7a95aaba45781b9287da2d...727c61fab22830f3d665c286b1e9220b02b1f39c
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