Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
adb77e1c by Andreas Tille at 2020-11-06T13:45:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,68 +1,74 @@
-Last-Update: Fri, 06 Nov 2020 01:42:03 +0000
+Last-Update: Fri, 06 Nov 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 175 | {covid-19,imaging} |
- orthanc | 94 | {practice,imaging,covid-19} |
- orthanc-wsi | 47 | {practice,covid-19,his,oncology,imaging,laboratory} |
- htsjdk | 37 | {bio-dev} |
+ dcmtk | 176 | {covid-19,imaging} |
+ orthanc | 93 | {practice,imaging,covid-19} |
+ orthanc-wsi | 48 | {practice,covid-19,his,oncology,imaging,laboratory} |
+ htsjdk | 36 | {bio-dev} |
gdcm | 35 | {imaging-dev} |
- dicom3tools | 33 | {imaging} |
- dicomscope | 33 | {imaging} |
- dcm2niix | 24 | {imaging} |
- gdcm | 21 | {imaging,covid-19} |
- biosig | 16 | {imaging,physics} |
- pixelmed | 16 | {imaging} |
- gnumed-server | 15 | {practice,covid-19} |
- minc-tools | 15 | {imaging} |
+ dicom3tools | 34 | {imaging} |
+ dicomscope | 32 | {imaging} |
+ dcm2niix | 25 | {imaging} |
+ gdcm | 22 | {imaging,covid-19} |
+ biosig | 17 | {imaging,physics} |
+ pixelmed | 17 | {imaging} |
+ gnumed-server | 16 | {practice,covid-19} |
+ minc-tools | 16 | {imaging} |
+ invesalius | 15 | {imaging} |
+ nifticlib | 15 | {imaging} |
gdcm | 14 | {imaging-dev} |
- invesalius | 14 | {imaging} |
- nifticlib | 14 | {imaging} |
ngs-sdk | 13 | {bio-dev} |
+ vtk-dicom | 13 | {imaging} |
king | 12 | {imaging,typesetting} |
- vtk-dicom | 12 | {imaging} |
- openslide | 11 | {imaging} |
- ngs-sdk | 10 | {bio-dev} |
+ openslide | 12 | {imaging} |
+ ngs-sdk | 11 | {bio-dev} |
+ plastimatch | 11 | {imaging} |
nifticlib | 10 | {imaging-dev} |
- plastimatch | 10 | {imaging} |
+ obitools | 10 | {bio} |
adun.app | 9 | {bio} |
insighttoolkit4 | 8 | {imaging-dev} |
librg-utils-perl | 8 | {bio} |
- obitools | 8 | {bio} |
dicompyler | 7 | {oncology} |
+ multiqc | 7 | {covid-19,bio} |
+ pymia | 7 | {imaging-dev} |
+ biomaj3-cli | 6 | {cloud} |
ea-utils | 6 | {bio} |
melting | 6 | {bio,cloud} |
- multiqc | 6 | {covid-19,bio} |
orthanc-webviewer | 6 | {imaging} |
- pymia | 6 | {imaging-dev} |
staden | 6 | {bio} |
treeview | 6 | {bio,bio-phylogeny} |
bart-view | 5 | {imaging} |
biojava-live | 5 | {bio-dev} |
- biomaj3-cli | 5 | {cloud} |
- fastlink | 5 | {cloud,bio} |
- jebl2 | 5 | {bio-dev} |
+ elastix | 5 | {imaging} |
lagan | 5 | {bio} |
libminc | 5 | {imaging-dev} |
mipe | 5 | {cloud,bio} |
ngs-sdk | 5 | {bio-dev} |
+ phyutility | 5 | {cloud,bio} |
predictprotein | 5 | {bio} |
+ rambo-k | 5 | {bio} |
salmon | 5 | {bio,covid-19} |
+ seqsero | 5 | {bio} |
sibsim4 | 5 | {bio,cloud} |
stacks | 5 | {bio} |
alter-sequence-alignment | 4 | {bio} |
anfo | 4 | {bio,cloud} |
assemblytics | 4 | {bio} |
+ bamkit | 4 | {covid-19,bio} |
+ biomaj3-daemon | 4 | {bio} |
bio-tradis | 4 | {bio-dev,bio} |
brig | 4 | {bio} |
+ busco | 4 | {bio,covid-19} |
clonalorigin | 4 | {bio} |
delly | 4 | {covid-19,bio} |
ecopcr | 4 | {bio} |
- elastix | 4 | {imaging} |
embassy-domalign | 4 | {cloud,bio} |
embassy-domsearch | 4 | {cloud,bio} |
estscan | 4 | {bio} |
+ fastlink | 4 | {cloud,bio} |
gatb-core | 4 | {bio} |
+ jebl2 | 4 | {bio-dev} |
jellyfish1 | 4 | {bio} |
lamarc | 4 | {bio} |
libncl | 4 | {bio} |
@@ -70,23 +76,17 @@ Last-Update: Fri, 06 Nov 2020 01:42:03 +0000
orthanc-dicomweb | 4 | {covid-19,imaging} |
phast | 4 | {bio} |
phybin | 4 | {bio} |
- phyutility | 4 | {cloud,bio} |
piler | 4 | {bio} |
placnet | 4 | {bio} |
prime-phylo | 4 | {cloud,bio} |
- rambo-k | 4 | {bio} |
saint | 4 | {bio} |
- seqsero | 4 | {bio} |
soapsnp | 4 | {bio} |
- spread-phy | 4 | {bio,bio-phylogeny} |
tracetuner | 4 | {bio} |
yaha | 4 | {bio} |
arden | 3 | {bio,cloud} |
- bamkit | 3 | {covid-19,bio} |
+ atropos | 3 | {bio} |
beast-mcmc | 3 | {bio-phylogeny,bio} |
- biomaj3-daemon | 3 | {bio} |
bitseq | 3 | {bio} |
- busco | 3 | {bio,covid-19} |
clonalframeml | 3 | {covid-19,bio} |
dindel | 3 | {bio} |
embassy-domainatrix | 3 | {bio,cloud} |
@@ -101,7 +101,6 @@ Last-Update: Fri, 06 Nov 2020 01:42:03 +0000
murasaki | 3 | {bio} |
neobio | 3 | {bio,cloud} |
paraclu | 3 | {cloud,bio} |
- pbdagcon | 3 | {bio} |
perm | 3 | {cloud,bio} |
plasmidseeker | 3 | {bio} |
pscan-chip | 3 | {bio} |
@@ -115,13 +114,14 @@ Last-Update: Fri, 06 Nov 2020 01:42:03 +0000
soapaligner | 3 | {bio} |
spaced | 3 | {bio} |
sprai | 3 | {bio} |
+ spread-phy | 3 | {bio,bio-phylogeny} |
suitename | 3 | {bio} |
surankco | 3 | {bio} |
zalign | 3 | {bio,cloud} |
- atropos | 2 | {bio} |
canu | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
ctn | 2 | {imaging-dev} |
+ emboss-explorer | 2 | {bio} |
emmax | 2 | {bio} |
ipig | 2 | {bio} |
jmodeltest | 2 | {bio,bio-phylogeny} |
@@ -131,9 +131,11 @@ Last-Update: Fri, 06 Nov 2020 01:42:03 +0000
librdp-taxonomy-tree-java | 2 | {bio-dev} |
logol | 2 | {bio} |
mauve-aligner | 2 | {bio} |
+ nanosv | 2 | {bio,covid-19} |
orthanc-mysql | 2 | {imaging} |
orthanc-postgresql | 2 | {imaging} |
oscar | 2 | {data,practice,tools} |
+ pbdagcon | 2 | {bio} |
pilercr | 2 | {bio} |
proalign | 2 | {bio,bio-phylogeny} |
prottest | 2 | {bio-phylogeny,bio} |
@@ -145,29 +147,27 @@ Last-Update: Fri, 06 Nov 2020 01:42:03 +0000
skesa | 2 | {bio} |
trace2dbest | 2 | {bio} |
tvc | 2 | {bio} |
+ yanagiba | 2 | {covid-19,bio} |
acedb | 1 | {bio,cloud} |
bbmap | 1 | {bio,covid-19} |
biosig | 1 | {physics,imaging-dev} |
- blasr | 1 | {bio,bio-ngs} |
blimps | 1 | {bio} |
bustools | 1 | {bio,covid-19} |
cufflinks | 1 | {bio,cloud} |
dextractor | 1 | {covid-19,bio} |
embassy-phylip | 1 | {bio,cloud} |
- emboss-explorer | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
+ libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
lighter | 1 | {covid-19,bio} |
metaphlan2 | 1 | {bio} |
- nanosv | 1 | {bio,covid-19} |
opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
plasmidid | 1 | {covid-19,bio} |
pplacer | 1 | {bio,bio-phylogeny,covid-19} |
- sambamba | 1 | {bio} |
seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
simrisc | 1 | {oncology} |
@@ -178,11 +178,11 @@ Last-Update: Fri, 06 Nov 2020 01:42:03 +0000
tophat-recondition | 1 | {bio,covid-19} |
varscan | 1 | {covid-19,bio} |
vienna-rna | 1 | {covid-19,bio} |
- yanagiba | 1 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosig | 0 | {physics} |
biosyntax | 0 | {bio} |
+ blasr | 0 | {bio,bio-ngs} |
camp | 0 | {imaging-dev} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
@@ -198,7 +198,6 @@ Last-Update: Fri, 06 Nov 2020 01:42:03 +0000
libbpp-raa | 0 | {bio-dev} |
libbpp-seq | 0 | {bio-dev} |
libbpp-seq-omics | 0 | {bio-dev} |
- libchado-perl | 0 | {bio-dev} |
libdisorder | 0 | {bio-dev} |
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
@@ -229,8 +228,10 @@ Last-Update: Fri, 06 Nov 2020 01:42:03 +0000
pigx-rnaseq | 0 | {bio,covid-19} |
pique | 0 | {bio} |
q2templates | 0 | {bio} |
+ sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
+ shovill | 0 | {bio,covid-19} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
smrtanalysis | 0 | {bio,covid-19} |
@@ -238,7 +239,6 @@ Last-Update: Fri, 06 Nov 2020 01:42:03 +0000
vtk-dicom | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
- shovill | -1 | {bio,covid-19} |
svim | -1 | {bio} |
(268 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/adb77e1ca2aa339737176a57c21f5fc4be71bfb6
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/adb77e1ca2aa339737176a57c21f5fc4be71bfb6
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