Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
ea7c5a80 by Andreas Tille at 2020-11-07T13:45:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,19 +1,19 @@
-Last-Update: Sat, 07 Nov 2020 01:42:04 +0000
+Last-Update: Sat, 07 Nov 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 176 | {covid-19,imaging} |
- orthanc | 93 | {practice,imaging,covid-19} |
- orthanc-wsi | 48 | {practice,covid-19,his,oncology,imaging,laboratory} |
+ dcmtk | 177 | {covid-19,imaging} |
+ orthanc | 94 | {practice,imaging,covid-19} |
+ orthanc-wsi | 50 | {practice,covid-19,his,oncology,imaging,laboratory} |
htsjdk | 36 | {bio-dev} |
- gdcm | 35 | {imaging-dev} |
- dicom3tools | 34 | {imaging} |
- dicomscope | 32 | {imaging} |
- dcm2niix | 25 | {imaging} |
+ gdcm | 34 | {imaging-dev} |
+ dicom3tools | 32 | {imaging} |
+ dicomscope | 30 | {imaging} |
+ dcm2niix | 24 | {imaging} |
gdcm | 22 | {imaging,covid-19} |
- biosig | 17 | {imaging,physics} |
+ gnumed-server | 17 | {practice,covid-19} |
pixelmed | 17 | {imaging} |
- gnumed-server | 16 | {practice,covid-19} |
+ biosig | 16 | {imaging,physics} |
minc-tools | 16 | {imaging} |
invesalius | 15 | {imaging} |
nifticlib | 15 | {imaging} |
@@ -23,40 +23,40 @@ Last-Update: Sat, 07 Nov 2020 01:42:04 +0000
king | 12 | {imaging,typesetting} |
openslide | 12 | {imaging} |
ngs-sdk | 11 | {bio-dev} |
+ obitools | 11 | {bio} |
plastimatch | 11 | {imaging} |
- nifticlib | 10 | {imaging-dev} |
- obitools | 10 | {bio} |
- adun.app | 9 | {bio} |
- insighttoolkit4 | 8 | {imaging-dev} |
+ adun.app | 10 | {bio} |
librg-utils-perl | 8 | {bio} |
- dicompyler | 7 | {oncology} |
+ nifticlib | 8 | {imaging-dev} |
+ biomaj3-cli | 7 | {cloud} |
+ insighttoolkit4 | 7 | {imaging-dev} |
multiqc | 7 | {covid-19,bio} |
+ orthanc-webviewer | 7 | {imaging} |
pymia | 7 | {imaging-dev} |
- biomaj3-cli | 6 | {cloud} |
+ dicompyler | 6 | {oncology} |
ea-utils | 6 | {bio} |
melting | 6 | {bio,cloud} |
- orthanc-webviewer | 6 | {imaging} |
+ rambo-k | 6 | {bio} |
+ seqsero | 6 | {bio} |
+ stacks | 6 | {bio} |
staden | 6 | {bio} |
treeview | 6 | {bio,bio-phylogeny} |
bart-view | 5 | {imaging} |
biojava-live | 5 | {bio-dev} |
+ biomaj3-daemon | 5 | {bio} |
elastix | 5 | {imaging} |
lagan | 5 | {bio} |
libminc | 5 | {imaging-dev} |
mipe | 5 | {cloud,bio} |
ngs-sdk | 5 | {bio-dev} |
+ orthanc-dicomweb | 5 | {covid-19,imaging} |
phyutility | 5 | {cloud,bio} |
predictprotein | 5 | {bio} |
- rambo-k | 5 | {bio} |
salmon | 5 | {bio,covid-19} |
- seqsero | 5 | {bio} |
sibsim4 | 5 | {bio,cloud} |
- stacks | 5 | {bio} |
- alter-sequence-alignment | 4 | {bio} |
anfo | 4 | {bio,cloud} |
assemblytics | 4 | {bio} |
bamkit | 4 | {covid-19,bio} |
- biomaj3-daemon | 4 | {bio} |
bio-tradis | 4 | {bio-dev,bio} |
brig | 4 | {bio} |
busco | 4 | {bio,covid-19} |
@@ -72,8 +72,7 @@ Last-Update: Sat, 07 Nov 2020 01:42:04 +0000
jellyfish1 | 4 | {bio} |
lamarc | 4 | {bio} |
libncl | 4 | {bio} |
- libsbml | 4 | {bio-dev} |
- orthanc-dicomweb | 4 | {covid-19,imaging} |
+ microbegps | 4 | {bio} |
phast | 4 | {bio} |
phybin | 4 | {bio} |
piler | 4 | {bio} |
@@ -83,6 +82,7 @@ Last-Update: Sat, 07 Nov 2020 01:42:04 +0000
soapsnp | 4 | {bio} |
tracetuner | 4 | {bio} |
yaha | 4 | {bio} |
+ alter-sequence-alignment | 3 | {bio} |
arden | 3 | {bio,cloud} |
atropos | 3 | {bio} |
beast-mcmc | 3 | {bio-phylogeny,bio} |
@@ -95,11 +95,13 @@ Last-Update: Sat, 07 Nov 2020 01:42:04 +0000
getdata | 3 | {bio} |
ghmm | 3 | {bio} |
hinge | 3 | {bio} |
+ libsbml | 3 | {bio-dev} |
mhap | 3 | {bio,bio-ngs} |
- microbegps | 3 | {bio} |
mrs | 3 | {bio} |
murasaki | 3 | {bio} |
neobio | 3 | {bio,cloud} |
+ orthanc-mysql | 3 | {imaging} |
+ orthanc-postgresql | 3 | {imaging} |
paraclu | 3 | {cloud,bio} |
perm | 3 | {cloud,bio} |
plasmidseeker | 3 | {bio} |
@@ -120,20 +122,18 @@ Last-Update: Sat, 07 Nov 2020 01:42:04 +0000
zalign | 3 | {bio,cloud} |
canu | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
- ctn | 2 | {imaging-dev} |
emboss-explorer | 2 | {bio} |
emmax | 2 | {bio} |
ipig | 2 | {bio} |
jmodeltest | 2 | {bio,bio-phylogeny} |
kmerresistance | 2 | {bio} |
+ libchado-perl | 2 | {bio-dev} |
libdivsufsort | 2 | {bio-dev} |
libpal-java | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
logol | 2 | {bio} |
mauve-aligner | 2 | {bio} |
nanosv | 2 | {bio,covid-19} |
- orthanc-mysql | 2 | {imaging} |
- orthanc-postgresql | 2 | {imaging} |
oscar | 2 | {data,practice,tools} |
pbdagcon | 2 | {bio} |
pilercr | 2 | {bio} |
@@ -153,11 +153,11 @@ Last-Update: Sat, 07 Nov 2020 01:42:04 +0000
biosig | 1 | {physics,imaging-dev} |
blimps | 1 | {bio} |
bustools | 1 | {bio,covid-19} |
+ ctn | 1 | {imaging-dev} |
cufflinks | 1 | {bio,cloud} |
dextractor | 1 | {covid-19,bio} |
embassy-phylip | 1 | {bio,cloud} |
libbio-mage-utils-perl | 1 | {bio-dev} |
- libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
@@ -165,7 +165,6 @@ Last-Update: Sat, 07 Nov 2020 01:42:04 +0000
metaphlan2 | 1 | {bio} |
opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
- papyrus | 1 | {imaging-dev} |
plasmidid | 1 | {covid-19,bio} |
pplacer | 1 | {bio,bio-phylogeny,covid-19} |
seqan | 1 | {bio-dev} |
@@ -177,7 +176,6 @@ Last-Update: Sat, 07 Nov 2020 01:42:04 +0000
thesias | 1 | {covid-19,bio} |
tophat-recondition | 1 | {bio,covid-19} |
varscan | 1 | {covid-19,bio} |
- vienna-rna | 1 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosig | 0 | {physics} |
@@ -222,6 +220,7 @@ Last-Update: Sat, 07 Nov 2020 01:42:04 +0000
nifticlib | 0 | {imaging-dev} |
openslide | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
+ papyrus | 0 | {imaging-dev} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
@@ -236,6 +235,7 @@ Last-Update: Sat, 07 Nov 2020 01:42:04 +0000
simpleitk | 0 | {imaging-dev} |
smrtanalysis | 0 | {bio,covid-19} |
varna | 0 | {bio} |
+ vienna-rna | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ea7c5a809e4682946b4ea9cf504a13cd631c440e
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ea7c5a809e4682946b4ea9cf504a13cd631c440e
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