Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
d271d03c by Andreas Tille at 2020-11-08T13:45:39+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,49 +1,43 @@
-Last-Update: Sun, 08 Nov 2020 01:42:04 +0000
+Last-Update: Sun, 08 Nov 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 177 | {covid-19,imaging} |
- orthanc | 94 | {practice,imaging,covid-19} |
- orthanc-wsi | 50 | {practice,covid-19,his,oncology,imaging,laboratory} |
- htsjdk | 36 | {bio-dev} |
- gdcm | 34 | {imaging-dev} |
- dicom3tools | 32 | {imaging} |
- dicomscope | 30 | {imaging} |
+ dcmtk | 176 | {covid-19,imaging} |
+ orthanc | 92 | {practice,imaging,covid-19} |
+ orthanc-wsi | 49 | {practice,covid-19,his,oncology,imaging,laboratory} |
+ gdcm | 33 | {imaging-dev} |
+ htsjdk | 33 | {bio-dev} |
+ dicom3tools | 30 | {imaging} |
+ dicomscope | 29 | {imaging} |
dcm2niix | 24 | {imaging} |
- gdcm | 22 | {imaging,covid-19} |
+ gdcm | 21 | {imaging,covid-19} |
gnumed-server | 17 | {practice,covid-19} |
pixelmed | 17 | {imaging} |
- biosig | 16 | {imaging,physics} |
- minc-tools | 16 | {imaging} |
+ nifticlib | 16 | {imaging} |
+ biosig | 15 | {imaging,physics} |
invesalius | 15 | {imaging} |
- nifticlib | 15 | {imaging} |
+ minc-tools | 15 | {imaging} |
gdcm | 14 | {imaging-dev} |
- ngs-sdk | 13 | {bio-dev} |
- vtk-dicom | 13 | {imaging} |
- king | 12 | {imaging,typesetting} |
- openslide | 12 | {imaging} |
- ngs-sdk | 11 | {bio-dev} |
- obitools | 11 | {bio} |
+ openslide | 13 | {imaging} |
+ ngs-sdk | 12 | {bio-dev} |
+ obitools | 12 | {bio} |
+ vtk-dicom | 12 | {imaging} |
+ king | 11 | {imaging,typesetting} |
plastimatch | 11 | {imaging} |
adun.app | 10 | {bio} |
- librg-utils-perl | 8 | {bio} |
nifticlib | 8 | {imaging-dev} |
- biomaj3-cli | 7 | {cloud} |
+ pymia | 8 | {imaging-dev} |
insighttoolkit4 | 7 | {imaging-dev} |
+ librg-utils-perl | 7 | {bio} |
multiqc | 7 | {covid-19,bio} |
orthanc-webviewer | 7 | {imaging} |
- pymia | 7 | {imaging-dev} |
+ biomaj3-cli | 6 | {cloud} |
dicompyler | 6 | {oncology} |
ea-utils | 6 | {bio} |
melting | 6 | {bio,cloud} |
- rambo-k | 6 | {bio} |
- seqsero | 6 | {bio} |
- stacks | 6 | {bio} |
- staden | 6 | {bio} |
treeview | 6 | {bio,bio-phylogeny} |
bart-view | 5 | {imaging} |
biojava-live | 5 | {bio-dev} |
- biomaj3-daemon | 5 | {bio} |
elastix | 5 | {imaging} |
lagan | 5 | {bio} |
libminc | 5 | {imaging-dev} |
@@ -51,14 +45,16 @@ Last-Update: Sun, 08 Nov 2020 01:42:04 +0000
ngs-sdk | 5 | {bio-dev} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
phyutility | 5 | {cloud,bio} |
- predictprotein | 5 | {bio} |
- salmon | 5 | {bio,covid-19} |
+ rambo-k | 5 | {bio} |
+ seqsero | 5 | {bio} |
sibsim4 | 5 | {bio,cloud} |
+ stacks | 5 | {bio} |
+ staden | 5 | {bio} |
anfo | 4 | {bio,cloud} |
assemblytics | 4 | {bio} |
bamkit | 4 | {covid-19,bio} |
+ biomaj3-daemon | 4 | {bio} |
bio-tradis | 4 | {bio-dev,bio} |
- brig | 4 | {bio} |
busco | 4 | {bio,covid-19} |
clonalorigin | 4 | {bio} |
delly | 4 | {covid-19,bio} |
@@ -68,17 +64,16 @@ Last-Update: Sun, 08 Nov 2020 01:42:04 +0000
estscan | 4 | {bio} |
fastlink | 4 | {cloud,bio} |
gatb-core | 4 | {bio} |
- jebl2 | 4 | {bio-dev} |
jellyfish1 | 4 | {bio} |
lamarc | 4 | {bio} |
libncl | 4 | {bio} |
- microbegps | 4 | {bio} |
phast | 4 | {bio} |
phybin | 4 | {bio} |
piler | 4 | {bio} |
- placnet | 4 | {bio} |
+ predictprotein | 4 | {bio} |
prime-phylo | 4 | {cloud,bio} |
saint | 4 | {bio} |
+ salmon | 4 | {bio,covid-19} |
soapsnp | 4 | {bio} |
tracetuner | 4 | {bio} |
yaha | 4 | {bio} |
@@ -87,6 +82,7 @@ Last-Update: Sun, 08 Nov 2020 01:42:04 +0000
atropos | 3 | {bio} |
beast-mcmc | 3 | {bio-phylogeny,bio} |
bitseq | 3 | {bio} |
+ brig | 3 | {bio} |
clonalframeml | 3 | {covid-19,bio} |
dindel | 3 | {bio} |
embassy-domainatrix | 3 | {bio,cloud} |
@@ -95,8 +91,10 @@ Last-Update: Sun, 08 Nov 2020 01:42:04 +0000
getdata | 3 | {bio} |
ghmm | 3 | {bio} |
hinge | 3 | {bio} |
+ jebl2 | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
mhap | 3 | {bio,bio-ngs} |
+ microbegps | 3 | {bio} |
mrs | 3 | {bio} |
murasaki | 3 | {bio} |
neobio | 3 | {bio,cloud} |
@@ -104,6 +102,7 @@ Last-Update: Sun, 08 Nov 2020 01:42:04 +0000
orthanc-postgresql | 3 | {imaging} |
paraclu | 3 | {cloud,bio} |
perm | 3 | {cloud,bio} |
+ placnet | 3 | {bio} |
plasmidseeker | 3 | {bio} |
pscan-chip | 3 | {bio} |
quorum | 3 | {bio} |
@@ -127,7 +126,6 @@ Last-Update: Sun, 08 Nov 2020 01:42:04 +0000
ipig | 2 | {bio} |
jmodeltest | 2 | {bio,bio-phylogeny} |
kmerresistance | 2 | {bio} |
- libchado-perl | 2 | {bio-dev} |
libdivsufsort | 2 | {bio-dev} |
libpal-java | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
@@ -151,13 +149,13 @@ Last-Update: Sun, 08 Nov 2020 01:42:04 +0000
acedb | 1 | {bio,cloud} |
bbmap | 1 | {bio,covid-19} |
biosig | 1 | {physics,imaging-dev} |
- blimps | 1 | {bio} |
bustools | 1 | {bio,covid-19} |
ctn | 1 | {imaging-dev} |
cufflinks | 1 | {bio,cloud} |
dextractor | 1 | {covid-19,bio} |
embassy-phylip | 1 | {bio,cloud} |
libbio-mage-utils-perl | 1 | {bio-dev} |
+ libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
@@ -168,7 +166,6 @@ Last-Update: Sun, 08 Nov 2020 01:42:04 +0000
plasmidid | 1 | {covid-19,bio} |
pplacer | 1 | {bio,bio-phylogeny,covid-19} |
seqan | 1 | {bio-dev} |
- sift | 1 | {bio} |
simrisc | 1 | {oncology} |
skewer | 1 | {bio} |
spaln | 1 | {bio,covid-19} |
@@ -181,6 +178,7 @@ Last-Update: Sun, 08 Nov 2020 01:42:04 +0000
biosig | 0 | {physics} |
biosyntax | 0 | {bio} |
blasr | 0 | {bio,bio-ngs} |
+ blimps | 0 | {bio} |
camp | 0 | {imaging-dev} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
@@ -231,6 +229,7 @@ Last-Update: Sun, 08 Nov 2020 01:42:04 +0000
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
shovill | 0 | {bio,covid-19} |
+ sift | 0 | {bio} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
smrtanalysis | 0 | {bio,covid-19} |
@@ -240,5 +239,5 @@ Last-Update: Sun, 08 Nov 2020 01:42:04 +0000
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
svim | -1 | {bio} |
-(268 rows)
+(267 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d271d03c6502244f998d047299fe519143ac1dac
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d271d03c6502244f998d047299fe519143ac1dac
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