Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
db606604 by Andreas Tille at 2020-11-10T13:45:22+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,77 +1,78 @@
-Last-Update: Tue, 10 Nov 2020 01:42:03 +0000
+Last-Update: Tue, 10 Nov 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 176 | {covid-19,imaging} |
- orthanc | 92 | {practice,imaging,covid-19} |
- orthanc-wsi | 49 | {practice,covid-19,his,oncology,imaging,laboratory} |
- gdcm | 33 | {imaging-dev} |
- htsjdk | 33 | {bio-dev} |
+ dcmtk | 175 | {imaging,covid-19} |
+ orthanc | 93 | {covid-19,practice,imaging} |
+ orthanc-wsi | 50 | {imaging,oncology,covid-19,his,practice,laboratory} |
+ gdcm | 32 | {imaging-dev} |
+ htsjdk | 31 | {bio-dev} |
dicom3tools | 30 | {imaging} |
- dicomscope | 29 | {imaging} |
- dcm2niix | 24 | {imaging} |
+ dicomscope | 28 | {imaging} |
+ dcm2niix | 21 | {imaging} |
gdcm | 21 | {imaging,covid-19} |
gnumed-server | 17 | {practice,covid-19} |
pixelmed | 17 | {imaging} |
- nifticlib | 16 | {imaging} |
biosig | 15 | {imaging,physics} |
invesalius | 15 | {imaging} |
minc-tools | 15 | {imaging} |
+ nifticlib | 15 | {imaging} |
gdcm | 14 | {imaging-dev} |
openslide | 13 | {imaging} |
- ngs-sdk | 12 | {bio-dev} |
- obitools | 12 | {bio} |
vtk-dicom | 12 | {imaging} |
king | 11 | {imaging,typesetting} |
+ ngs-sdk | 11 | {bio-dev} |
+ obitools | 11 | {bio} |
plastimatch | 11 | {imaging} |
adun.app | 10 | {bio} |
- nifticlib | 8 | {imaging-dev} |
- pymia | 8 | {imaging-dev} |
+ ngs-sdk | 10 | {bio-dev} |
+ nifticlib | 9 | {imaging-dev} |
insighttoolkit4 | 7 | {imaging-dev} |
- librg-utils-perl | 7 | {bio} |
- multiqc | 7 | {covid-19,bio} |
+ multiqc | 7 | {bio,covid-19} |
orthanc-webviewer | 7 | {imaging} |
+ pymia | 7 | {imaging-dev} |
biomaj3-cli | 6 | {cloud} |
dicompyler | 6 | {oncology} |
ea-utils | 6 | {bio} |
- melting | 6 | {bio,cloud} |
+ melting | 6 | {cloud,bio} |
treeview | 6 | {bio,bio-phylogeny} |
bart-view | 5 | {imaging} |
biojava-live | 5 | {bio-dev} |
elastix | 5 | {imaging} |
lagan | 5 | {bio} |
- libminc | 5 | {imaging-dev} |
- mipe | 5 | {cloud,bio} |
+ librg-utils-perl | 5 | {bio} |
+ mipe | 5 | {bio,cloud} |
ngs-sdk | 5 | {bio-dev} |
- orthanc-dicomweb | 5 | {covid-19,imaging} |
+ orthanc-dicomweb | 5 | {imaging,covid-19} |
phyutility | 5 | {cloud,bio} |
rambo-k | 5 | {bio} |
seqsero | 5 | {bio} |
sibsim4 | 5 | {bio,cloud} |
stacks | 5 | {bio} |
staden | 5 | {bio} |
- anfo | 4 | {bio,cloud} |
+ anfo | 4 | {cloud,bio} |
assemblytics | 4 | {bio} |
bamkit | 4 | {covid-19,bio} |
biomaj3-daemon | 4 | {bio} |
- bio-tradis | 4 | {bio-dev,bio} |
+ bio-tradis | 4 | {bio,bio-dev} |
busco | 4 | {bio,covid-19} |
clonalorigin | 4 | {bio} |
delly | 4 | {covid-19,bio} |
ecopcr | 4 | {bio} |
- embassy-domalign | 4 | {cloud,bio} |
+ embassy-domalign | 4 | {bio,cloud} |
embassy-domsearch | 4 | {cloud,bio} |
estscan | 4 | {bio} |
- fastlink | 4 | {cloud,bio} |
+ fastlink | 4 | {bio,cloud} |
gatb-core | 4 | {bio} |
jellyfish1 | 4 | {bio} |
lamarc | 4 | {bio} |
+ libminc | 4 | {imaging-dev} |
libncl | 4 | {bio} |
phast | 4 | {bio} |
phybin | 4 | {bio} |
piler | 4 | {bio} |
predictprotein | 4 | {bio} |
- prime-phylo | 4 | {cloud,bio} |
+ prime-phylo | 4 | {bio,cloud} |
saint | 4 | {bio} |
salmon | 4 | {bio,covid-19} |
soapsnp | 4 | {bio} |
@@ -80,12 +81,12 @@ Last-Update: Tue, 10 Nov 2020 01:42:03 +0000
alter-sequence-alignment | 3 | {bio} |
arden | 3 | {bio,cloud} |
atropos | 3 | {bio} |
- beast-mcmc | 3 | {bio-phylogeny,bio} |
+ beast-mcmc | 3 | {bio,bio-phylogeny} |
bitseq | 3 | {bio} |
brig | 3 | {bio} |
clonalframeml | 3 | {covid-19,bio} |
dindel | 3 | {bio} |
- embassy-domainatrix | 3 | {bio,cloud} |
+ embassy-domainatrix | 3 | {cloud,bio} |
fastml | 3 | {bio} |
fsm-lite | 3 | {bio} |
getdata | 3 | {bio} |
@@ -93,25 +94,23 @@ Last-Update: Tue, 10 Nov 2020 01:42:03 +0000
hinge | 3 | {bio} |
jebl2 | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
- mhap | 3 | {bio,bio-ngs} |
+ mhap | 3 | {bio-ngs,bio} |
microbegps | 3 | {bio} |
mrs | 3 | {bio} |
murasaki | 3 | {bio} |
- neobio | 3 | {bio,cloud} |
orthanc-mysql | 3 | {imaging} |
orthanc-postgresql | 3 | {imaging} |
- paraclu | 3 | {cloud,bio} |
- perm | 3 | {cloud,bio} |
+ paraclu | 3 | {bio,cloud} |
+ perm | 3 | {bio,cloud} |
placnet | 3 | {bio} |
plasmidseeker | 3 | {bio} |
pscan-chip | 3 | {bio} |
quorum | 3 | {bio} |
- rtax | 3 | {bio,cloud} |
+ rtax | 3 | {cloud,bio} |
runcircos-gui | 3 | {bio} |
samblaster | 3 | {bio,covid-19} |
scrm | 3 | {bio} |
segemehl | 3 | {bio} |
- sight | 3 | {imaging} |
soapaligner | 3 | {bio} |
spaced | 3 | {bio} |
sprai | 3 | {bio} |
@@ -120,7 +119,7 @@ Last-Update: Tue, 10 Nov 2020 01:42:03 +0000
surankco | 3 | {bio} |
zalign | 3 | {bio,cloud} |
canu | 2 | {bio} |
- cat-bat | 2 | {bio,covid-19} |
+ cat-bat | 2 | {covid-19,bio} |
emboss-explorer | 2 | {bio} |
emmax | 2 | {bio} |
ipig | 2 | {bio} |
@@ -132,28 +131,28 @@ Last-Update: Tue, 10 Nov 2020 01:42:03 +0000
logol | 2 | {bio} |
mauve-aligner | 2 | {bio} |
nanosv | 2 | {bio,covid-19} |
- oscar | 2 | {data,practice,tools} |
+ neobio | 2 | {cloud,bio} |
pbdagcon | 2 | {bio} |
pilercr | 2 | {bio} |
proalign | 2 | {bio,bio-phylogeny} |
- prottest | 2 | {bio-phylogeny,bio} |
+ prottest | 2 | {bio,bio-phylogeny} |
qcumber | 2 | {bio} |
rdp-alignment | 2 | {bio} |
rdp-classifier | 2 | {bio} |
samtools-legacy | 2 | {bio-dev} |
sga | 2 | {bio} |
+ sight | 2 | {imaging} |
skesa | 2 | {bio} |
trace2dbest | 2 | {bio} |
tvc | 2 | {bio} |
yanagiba | 2 | {covid-19,bio} |
acedb | 1 | {bio,cloud} |
bbmap | 1 | {bio,covid-19} |
- biosig | 1 | {physics,imaging-dev} |
- bustools | 1 | {bio,covid-19} |
+ biosig | 1 | {imaging-dev,physics} |
+ bustools | 1 | {covid-19,bio} |
ctn | 1 | {imaging-dev} |
cufflinks | 1 | {bio,cloud} |
- dextractor | 1 | {covid-19,bio} |
- embassy-phylip | 1 | {bio,cloud} |
+ dextractor | 1 | {bio,covid-19} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
@@ -162,9 +161,12 @@ Last-Update: Tue, 10 Nov 2020 01:42:03 +0000
lighter | 1 | {covid-19,bio} |
metaphlan2 | 1 | {bio} |
opencfu | 1 | {laboratory} |
+ openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
+ oscar | 1 | {practice,tools,data} |
+ papyrus | 1 | {imaging-dev} |
plasmidid | 1 | {covid-19,bio} |
- pplacer | 1 | {bio,bio-phylogeny,covid-19} |
+ pplacer | 1 | {covid-19,bio,bio-phylogeny} |
seqan | 1 | {bio-dev} |
simrisc | 1 | {oncology} |
skewer | 1 | {bio} |
@@ -177,7 +179,7 @@ Last-Update: Tue, 10 Nov 2020 01:42:03 +0000
biojava4-live | 0 | {bio-dev} |
biosig | 0 | {physics} |
biosyntax | 0 | {bio} |
- blasr | 0 | {bio,bio-ngs} |
+ blasr | 0 | {bio-ngs,bio} |
blimps | 0 | {bio} |
camp | 0 | {imaging-dev} |
fis-gtm | 0 | {his} |
@@ -198,7 +200,7 @@ Last-Update: Tue, 10 Nov 2020 01:42:03 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {imaging-dev,covid-19} |
+ libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
@@ -212,13 +214,11 @@ Last-Update: Tue, 10 Nov 2020 01:42:03 +0000
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {covid-19,bio-dev} |
+ milib | 0 | {bio-dev,covid-19} |
murasaki | 0 | {bio} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
- openslide | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
- papyrus | 0 | {imaging-dev} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
@@ -228,7 +228,7 @@ Last-Update: Tue, 10 Nov 2020 01:42:03 +0000
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
- shovill | 0 | {bio,covid-19} |
+ shovill | 0 | {covid-19,bio} |
sift | 0 | {bio} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/db6066044574f28eef124f0a44987debbea630b1
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/db6066044574f28eef124f0a44987debbea630b1
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