Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
a8c3902d by Andreas Tille at 2020-11-11T13:45:25+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,34 +1,34 @@
-Last-Update: Wed, 11 Nov 2020 01:42:03 +0000
+Last-Update: Wed, 11 Nov 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 175 | {imaging,covid-19} |
- orthanc | 93 | {covid-19,practice,imaging} |
- orthanc-wsi | 50 | {imaging,oncology,covid-19,his,practice,laboratory} |
- gdcm | 32 | {imaging-dev} |
- htsjdk | 31 | {bio-dev} |
- dicom3tools | 30 | {imaging} |
- dicomscope | 28 | {imaging} |
+ dcmtk | 179 | {imaging,covid-19} |
+ orthanc | 96 | {imaging,covid-19,practice} |
+ orthanc-wsi | 52 | {practice,laboratory,imaging,covid-19,oncology,his} |
+ gdcm | 30 | {imaging-dev} |
+ htsjdk | 29 | {bio-dev} |
+ dicom3tools | 28 | {imaging} |
+ dicomscope | 24 | {imaging} |
dcm2niix | 21 | {imaging} |
gdcm | 21 | {imaging,covid-19} |
- gnumed-server | 17 | {practice,covid-19} |
- pixelmed | 17 | {imaging} |
- biosig | 15 | {imaging,physics} |
+ gnumed-server | 18 | {practice,covid-19} |
+ pixelmed | 16 | {imaging} |
+ biosig | 15 | {physics,imaging} |
invesalius | 15 | {imaging} |
minc-tools | 15 | {imaging} |
nifticlib | 15 | {imaging} |
gdcm | 14 | {imaging-dev} |
openslide | 13 | {imaging} |
+ plastimatch | 12 | {imaging} |
vtk-dicom | 12 | {imaging} |
king | 11 | {imaging,typesetting} |
ngs-sdk | 11 | {bio-dev} |
obitools | 11 | {bio} |
- plastimatch | 11 | {imaging} |
adun.app | 10 | {bio} |
ngs-sdk | 10 | {bio-dev} |
- nifticlib | 9 | {imaging-dev} |
+ nifticlib | 8 | {imaging-dev} |
insighttoolkit4 | 7 | {imaging-dev} |
- multiqc | 7 | {bio,covid-19} |
+ multiqc | 7 | {covid-19,bio} |
orthanc-webviewer | 7 | {imaging} |
pymia | 7 | {imaging-dev} |
biomaj3-cli | 6 | {cloud} |
@@ -41,133 +41,132 @@ Last-Update: Wed, 11 Nov 2020 01:42:03 +0000
elastix | 5 | {imaging} |
lagan | 5 | {bio} |
librg-utils-perl | 5 | {bio} |
- mipe | 5 | {bio,cloud} |
+ mipe | 5 | {cloud,bio} |
ngs-sdk | 5 | {bio-dev} |
orthanc-dicomweb | 5 | {imaging,covid-19} |
phyutility | 5 | {cloud,bio} |
- rambo-k | 5 | {bio} |
seqsero | 5 | {bio} |
- sibsim4 | 5 | {bio,cloud} |
+ sibsim4 | 5 | {cloud,bio} |
stacks | 5 | {bio} |
- staden | 5 | {bio} |
anfo | 4 | {cloud,bio} |
assemblytics | 4 | {bio} |
- bamkit | 4 | {covid-19,bio} |
biomaj3-daemon | 4 | {bio} |
- bio-tradis | 4 | {bio,bio-dev} |
- busco | 4 | {bio,covid-19} |
+ bio-tradis | 4 | {bio-dev,bio} |
+ busco | 4 | {covid-19,bio} |
clonalorigin | 4 | {bio} |
- delly | 4 | {covid-19,bio} |
ecopcr | 4 | {bio} |
- embassy-domalign | 4 | {bio,cloud} |
- embassy-domsearch | 4 | {cloud,bio} |
+ embassy-domalign | 4 | {cloud,bio} |
estscan | 4 | {bio} |
fastlink | 4 | {bio,cloud} |
gatb-core | 4 | {bio} |
jellyfish1 | 4 | {bio} |
lamarc | 4 | {bio} |
- libminc | 4 | {imaging-dev} |
libncl | 4 | {bio} |
+ mrs | 4 | {bio} |
phast | 4 | {bio} |
phybin | 4 | {bio} |
piler | 4 | {bio} |
predictprotein | 4 | {bio} |
- prime-phylo | 4 | {bio,cloud} |
+ rambo-k | 4 | {bio} |
saint | 4 | {bio} |
- salmon | 4 | {bio,covid-19} |
- soapsnp | 4 | {bio} |
+ salmon | 4 | {covid-19,bio} |
+ staden | 4 | {bio} |
tracetuner | 4 | {bio} |
yaha | 4 | {bio} |
alter-sequence-alignment | 3 | {bio} |
- arden | 3 | {bio,cloud} |
+ arden | 3 | {cloud,bio} |
atropos | 3 | {bio} |
- beast-mcmc | 3 | {bio,bio-phylogeny} |
+ bamkit | 3 | {bio,covid-19} |
bitseq | 3 | {bio} |
brig | 3 | {bio} |
clonalframeml | 3 | {covid-19,bio} |
+ delly | 3 | {covid-19,bio} |
dindel | 3 | {bio} |
embassy-domainatrix | 3 | {cloud,bio} |
+ embassy-domsearch | 3 | {cloud,bio} |
fastml | 3 | {bio} |
fsm-lite | 3 | {bio} |
getdata | 3 | {bio} |
ghmm | 3 | {bio} |
hinge | 3 | {bio} |
- jebl2 | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
- mhap | 3 | {bio-ngs,bio} |
+ mhap | 3 | {bio,bio-ngs} |
microbegps | 3 | {bio} |
- mrs | 3 | {bio} |
- murasaki | 3 | {bio} |
orthanc-mysql | 3 | {imaging} |
orthanc-postgresql | 3 | {imaging} |
paraclu | 3 | {bio,cloud} |
perm | 3 | {bio,cloud} |
placnet | 3 | {bio} |
plasmidseeker | 3 | {bio} |
+ prime-phylo | 3 | {cloud,bio} |
pscan-chip | 3 | {bio} |
quorum | 3 | {bio} |
rtax | 3 | {cloud,bio} |
runcircos-gui | 3 | {bio} |
- samblaster | 3 | {bio,covid-19} |
+ samblaster | 3 | {covid-19,bio} |
scrm | 3 | {bio} |
segemehl | 3 | {bio} |
+ sight | 3 | {imaging} |
soapaligner | 3 | {bio} |
+ soapsnp | 3 | {bio} |
spaced | 3 | {bio} |
sprai | 3 | {bio} |
- spread-phy | 3 | {bio,bio-phylogeny} |
suitename | 3 | {bio} |
surankco | 3 | {bio} |
- zalign | 3 | {bio,cloud} |
+ zalign | 3 | {cloud,bio} |
+ beast-mcmc | 2 | {bio,bio-phylogeny} |
canu | 2 | {bio} |
cat-bat | 2 | {covid-19,bio} |
emboss-explorer | 2 | {bio} |
emmax | 2 | {bio} |
ipig | 2 | {bio} |
+ jebl2 | 2 | {bio-dev} |
jmodeltest | 2 | {bio,bio-phylogeny} |
kmerresistance | 2 | {bio} |
libdivsufsort | 2 | {bio-dev} |
+ libminc | 2 | {imaging-dev} |
libpal-java | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
logol | 2 | {bio} |
mauve-aligner | 2 | {bio} |
- nanosv | 2 | {bio,covid-19} |
+ murasaki | 2 | {bio} |
+ nanosv | 2 | {covid-19,bio} |
neobio | 2 | {cloud,bio} |
- pbdagcon | 2 | {bio} |
+ openslide | 2 | {imaging-dev} |
pilercr | 2 | {bio} |
- proalign | 2 | {bio,bio-phylogeny} |
- prottest | 2 | {bio,bio-phylogeny} |
+ proalign | 2 | {bio-phylogeny,bio} |
+ prottest | 2 | {bio-phylogeny,bio} |
qcumber | 2 | {bio} |
rdp-alignment | 2 | {bio} |
rdp-classifier | 2 | {bio} |
- samtools-legacy | 2 | {bio-dev} |
sga | 2 | {bio} |
- sight | 2 | {imaging} |
skesa | 2 | {bio} |
+ spread-phy | 2 | {bio-phylogeny,bio} |
trace2dbest | 2 | {bio} |
tvc | 2 | {bio} |
- yanagiba | 2 | {covid-19,bio} |
+ yanagiba | 2 | {bio,covid-19} |
acedb | 1 | {bio,cloud} |
bbmap | 1 | {bio,covid-19} |
- biosig | 1 | {imaging-dev,physics} |
+ biosig | 1 | {physics,imaging-dev} |
bustools | 1 | {covid-19,bio} |
ctn | 1 | {imaging-dev} |
cufflinks | 1 | {bio,cloud} |
dextractor | 1 | {bio,covid-19} |
+ htscodecs | 1 | {covid-19,bio-dev} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
- libvistaio | 1 | {imaging-dev} |
lighter | 1 | {covid-19,bio} |
metaphlan2 | 1 | {bio} |
opencfu | 1 | {laboratory} |
- openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
oscar | 1 | {practice,tools,data} |
papyrus | 1 | {imaging-dev} |
+ pbdagcon | 1 | {bio} |
plasmidid | 1 | {covid-19,bio} |
- pplacer | 1 | {covid-19,bio,bio-phylogeny} |
- seqan | 1 | {bio-dev} |
+ pplacer | 1 | {covid-19,bio-phylogeny,bio} |
+ samtools-legacy | 1 | {bio-dev} |
simrisc | 1 | {oncology} |
skewer | 1 | {bio} |
spaln | 1 | {bio,covid-19} |
@@ -184,7 +183,6 @@ Last-Update: Wed, 11 Nov 2020 01:42:03 +0000
camp | 0 | {imaging-dev} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
- htscodecs | 0 | {bio-dev,covid-19} |
intake | 0 | {bio,bio-dev} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -200,7 +198,7 @@ Last-Update: Wed, 11 Nov 2020 01:42:03 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {covid-19,imaging-dev} |
+ libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
@@ -210,6 +208,7 @@ Last-Update: Wed, 11 Nov 2020 01:42:03 +0000
libqes | 0 | {bio-dev} |
libseqlib | 0 | {bio-dev} |
libstatgen | 0 | {bio-dev} |
+ libvistaio | 0 | {imaging-dev} |
libxdf | 0 | {imaging-dev} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
@@ -227,8 +226,9 @@ Last-Update: Wed, 11 Nov 2020 01:42:03 +0000
q2templates | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
+ seqan | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
- shovill | 0 | {covid-19,bio} |
+ shovill | 0 | {bio,covid-19} |
sift | 0 | {bio} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
@@ -238,6 +238,8 @@ Last-Update: Wed, 11 Nov 2020 01:42:03 +0000
vtk-dicom | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
+ python-seqcluster | -1 | {bio} |
+ python-seqcluster | -1 | {bio-dev,covid-19} |
svim | -1 | {bio} |
-(267 rows)
+(269 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a8c3902d2a2da1f24647dca13776b82d443315be
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a8c3902d2a2da1f24647dca13776b82d443315be
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