Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
e4ac6566 by Andreas Tille at 2020-11-12T13:45:08+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,149 +1,145 @@
-Last-Update: Thu, 12 Nov 2020 01:42:04 +0000
+Last-Update: Thu, 12 Nov 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 179 | {imaging,covid-19} |
- orthanc | 96 | {imaging,covid-19,practice} |
+ dcmtk | 176 | {imaging,covid-19} |
+ orthanc | 95 | {imaging,covid-19,practice} |
orthanc-wsi | 52 | {practice,laboratory,imaging,covid-19,oncology,his} |
- gdcm | 30 | {imaging-dev} |
+ gdcm | 32 | {imaging-dev} |
htsjdk | 29 | {bio-dev} |
- dicom3tools | 28 | {imaging} |
- dicomscope | 24 | {imaging} |
+ dicom3tools | 26 | {imaging} |
+ dicomscope | 25 | {imaging} |
+ gdcm | 22 | {imaging,covid-19} |
dcm2niix | 21 | {imaging} |
- gdcm | 21 | {imaging,covid-19} |
gnumed-server | 18 | {practice,covid-19} |
+ gdcm | 16 | {imaging-dev} |
+ invesalius | 16 | {imaging} |
pixelmed | 16 | {imaging} |
biosig | 15 | {physics,imaging} |
- invesalius | 15 | {imaging} |
- minc-tools | 15 | {imaging} |
- nifticlib | 15 | {imaging} |
- gdcm | 14 | {imaging-dev} |
+ minc-tools | 14 | {imaging} |
+ nifticlib | 14 | {imaging} |
openslide | 13 | {imaging} |
plastimatch | 12 | {imaging} |
vtk-dicom | 12 | {imaging} |
+ adun.app | 11 | {bio} |
king | 11 | {imaging,typesetting} |
ngs-sdk | 11 | {bio-dev} |
- obitools | 11 | {bio} |
- adun.app | 10 | {bio} |
ngs-sdk | 10 | {bio-dev} |
- nifticlib | 8 | {imaging-dev} |
- insighttoolkit4 | 7 | {imaging-dev} |
+ obitools | 10 | {bio} |
+ nifticlib | 9 | {imaging-dev} |
+ insighttoolkit4 | 8 | {imaging-dev} |
multiqc | 7 | {covid-19,bio} |
orthanc-webviewer | 7 | {imaging} |
pymia | 7 | {imaging-dev} |
- biomaj3-cli | 6 | {cloud} |
- dicompyler | 6 | {oncology} |
ea-utils | 6 | {bio} |
+ librg-utils-perl | 6 | {bio} |
melting | 6 | {cloud,bio} |
+ seqsero | 6 | {bio} |
treeview | 6 | {bio,bio-phylogeny} |
+ bamkit | 5 | {bio,covid-19} |
bart-view | 5 | {imaging} |
biojava-live | 5 | {bio-dev} |
+ biomaj3-cli | 5 | {cloud} |
elastix | 5 | {imaging} |
- lagan | 5 | {bio} |
- librg-utils-perl | 5 | {bio} |
- mipe | 5 | {cloud,bio} |
ngs-sdk | 5 | {bio-dev} |
- orthanc-dicomweb | 5 | {imaging,covid-19} |
- phyutility | 5 | {cloud,bio} |
- seqsero | 5 | {bio} |
- sibsim4 | 5 | {cloud,bio} |
- stacks | 5 | {bio} |
- anfo | 4 | {cloud,bio} |
- assemblytics | 4 | {bio} |
+ rambo-k | 5 | {bio} |
biomaj3-daemon | 4 | {bio} |
bio-tradis | 4 | {bio-dev,bio} |
busco | 4 | {covid-19,bio} |
- clonalorigin | 4 | {bio} |
- ecopcr | 4 | {bio} |
- embassy-domalign | 4 | {cloud,bio} |
- estscan | 4 | {bio} |
- fastlink | 4 | {bio,cloud} |
- gatb-core | 4 | {bio} |
- jellyfish1 | 4 | {bio} |
- lamarc | 4 | {bio} |
- libncl | 4 | {bio} |
+ dicompyler | 4 | {oncology} |
+ lagan | 4 | {bio} |
+ mipe | 4 | {cloud,bio} |
mrs | 4 | {bio} |
- phast | 4 | {bio} |
- phybin | 4 | {bio} |
- piler | 4 | {bio} |
+ orthanc-dicomweb | 4 | {imaging,covid-19} |
+ phyutility | 4 | {cloud,bio} |
predictprotein | 4 | {bio} |
- rambo-k | 4 | {bio} |
- saint | 4 | {bio} |
- salmon | 4 | {covid-19,bio} |
- staden | 4 | {bio} |
+ sibsim4 | 4 | {cloud,bio} |
+ stacks | 4 | {bio} |
tracetuner | 4 | {bio} |
- yaha | 4 | {bio} |
alter-sequence-alignment | 3 | {bio} |
+ anfo | 3 | {cloud,bio} |
arden | 3 | {cloud,bio} |
- atropos | 3 | {bio} |
- bamkit | 3 | {bio,covid-19} |
+ assemblytics | 3 | {bio} |
+ beast-mcmc | 3 | {bio,bio-phylogeny} |
bitseq | 3 | {bio} |
brig | 3 | {bio} |
clonalframeml | 3 | {covid-19,bio} |
- delly | 3 | {covid-19,bio} |
- dindel | 3 | {bio} |
+ clonalorigin | 3 | {bio} |
+ ecopcr | 3 | {bio} |
embassy-domainatrix | 3 | {cloud,bio} |
- embassy-domsearch | 3 | {cloud,bio} |
- fastml | 3 | {bio} |
- fsm-lite | 3 | {bio} |
+ embassy-domalign | 3 | {cloud,bio} |
+ estscan | 3 | {bio} |
+ fastlink | 3 | {bio,cloud} |
+ gatb-core | 3 | {bio} |
getdata | 3 | {bio} |
ghmm | 3 | {bio} |
- hinge | 3 | {bio} |
+ jebl2 | 3 | {bio-dev} |
+ jellyfish1 | 3 | {bio} |
+ lamarc | 3 | {bio} |
+ libncl | 3 | {bio} |
libsbml | 3 | {bio-dev} |
mhap | 3 | {bio,bio-ngs} |
microbegps | 3 | {bio} |
+ murasaki | 3 | {bio} |
orthanc-mysql | 3 | {imaging} |
orthanc-postgresql | 3 | {imaging} |
paraclu | 3 | {bio,cloud} |
- perm | 3 | {bio,cloud} |
- placnet | 3 | {bio} |
- plasmidseeker | 3 | {bio} |
+ phast | 3 | {bio} |
+ phybin | 3 | {bio} |
+ piler | 3 | {bio} |
prime-phylo | 3 | {cloud,bio} |
- pscan-chip | 3 | {bio} |
quorum | 3 | {bio} |
- rtax | 3 | {cloud,bio} |
- runcircos-gui | 3 | {bio} |
- samblaster | 3 | {covid-19,bio} |
- scrm | 3 | {bio} |
- segemehl | 3 | {bio} |
+ saint | 3 | {bio} |
+ salmon | 3 | {covid-19,bio} |
sight | 3 | {imaging} |
- soapaligner | 3 | {bio} |
- soapsnp | 3 | {bio} |
spaced | 3 | {bio} |
- sprai | 3 | {bio} |
- suitename | 3 | {bio} |
+ staden | 3 | {bio} |
surankco | 3 | {bio} |
+ yaha | 3 | {bio} |
zalign | 3 | {cloud,bio} |
- beast-mcmc | 2 | {bio,bio-phylogeny} |
+ atropos | 2 | {bio} |
canu | 2 | {bio} |
cat-bat | 2 | {covid-19,bio} |
+ delly | 2 | {covid-19,bio} |
+ dindel | 2 | {bio} |
+ embassy-domsearch | 2 | {cloud,bio} |
emboss-explorer | 2 | {bio} |
- emmax | 2 | {bio} |
+ fastml | 2 | {bio} |
+ fsm-lite | 2 | {bio} |
+ hinge | 2 | {bio} |
ipig | 2 | {bio} |
- jebl2 | 2 | {bio-dev} |
jmodeltest | 2 | {bio,bio-phylogeny} |
- kmerresistance | 2 | {bio} |
libdivsufsort | 2 | {bio-dev} |
libminc | 2 | {imaging-dev} |
libpal-java | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
logol | 2 | {bio} |
mauve-aligner | 2 | {bio} |
- murasaki | 2 | {bio} |
+ metaphlan2 | 2 | {bio} |
nanosv | 2 | {covid-19,bio} |
neobio | 2 | {cloud,bio} |
openslide | 2 | {imaging-dev} |
- pilercr | 2 | {bio} |
+ perm | 2 | {bio,cloud} |
+ placnet | 2 | {bio} |
+ plasmidseeker | 2 | {bio} |
proalign | 2 | {bio-phylogeny,bio} |
prottest | 2 | {bio-phylogeny,bio} |
+ pscan-chip | 2 | {bio} |
qcumber | 2 | {bio} |
rdp-alignment | 2 | {bio} |
rdp-classifier | 2 | {bio} |
+ rtax | 2 | {cloud,bio} |
+ runcircos-gui | 2 | {bio} |
+ samblaster | 2 | {covid-19,bio} |
+ scrm | 2 | {bio} |
+ segemehl | 2 | {bio} |
sga | 2 | {bio} |
- skesa | 2 | {bio} |
+ soapaligner | 2 | {bio} |
+ soapsnp | 2 | {bio} |
+ sprai | 2 | {bio} |
spread-phy | 2 | {bio-phylogeny,bio} |
+ suitename | 2 | {bio} |
trace2dbest | 2 | {bio} |
- tvc | 2 | {bio} |
yanagiba | 2 | {bio,covid-19} |
acedb | 1 | {bio,cloud} |
bbmap | 1 | {bio,covid-19} |
@@ -152,27 +148,31 @@ Last-Update: Thu, 12 Nov 2020 01:42:04 +0000
ctn | 1 | {imaging-dev} |
cufflinks | 1 | {bio,cloud} |
dextractor | 1 | {bio,covid-19} |
+ emmax | 1 | {bio} |
htscodecs | 1 | {covid-19,bio-dev} |
+ kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
lighter | 1 | {covid-19,bio} |
- metaphlan2 | 1 | {bio} |
opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
oscar | 1 | {practice,tools,data} |
papyrus | 1 | {imaging-dev} |
pbdagcon | 1 | {bio} |
+ pilercr | 1 | {bio} |
plasmidid | 1 | {covid-19,bio} |
pplacer | 1 | {covid-19,bio-phylogeny,bio} |
samtools-legacy | 1 | {bio-dev} |
simrisc | 1 | {oncology} |
+ skesa | 1 | {bio} |
skewer | 1 | {bio} |
spaln | 1 | {bio,covid-19} |
srf | 1 | {bio-dev} |
thesias | 1 | {covid-19,bio} |
tophat-recondition | 1 | {bio,covid-19} |
+ tvc | 1 | {bio} |
varscan | 1 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e4ac6566f7fe6958d2c71b0c5ef610d2198a2dc5
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e4ac6566f7fe6958d2c71b0c5ef610d2198a2dc5
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