[med-svn] [Git][med-team/libmaus2][upstream] New upstream version 2.0.762+dfsg

[Étienne Mollier]

Étienne Mollier pushed to branch upstream at Debian Med / libmaus2


Commits:
9aaebf48 by Étienne Mollier at 2020-11-11T17:51:51+01:00
New upstream version 2.0.762+dfsg
- - - - -


30 changed files:

- ChangeLog
- Makefile.am
- README.md
- configure.ac
- − libmaus2irods.pc.in
- src/Makefile.am
- src/libmaus2/LibMausConfig.hpp.in
- src/libmaus2/aio/FileRemoval.cpp
- src/libmaus2/aio/InputStreamFactory.hpp
- src/libmaus2/aio/InputStreamFactoryContainer.hpp
- src/libmaus2/aio/OFStreamOutputStreamFactory.hpp
- src/libmaus2/aio/OutputStreamFactory.hpp
- src/libmaus2/aio/OutputStreamFactoryContainer.hpp
- src/libmaus2/aio/PosixFdOutputStreamFactory.hpp
- + src/libmaus2/aio/SecrecyInputStreamFactory.cpp
- src/libmaus2/irods/IRodsCommProvider.hpp → src/libmaus2/aio/SecrecyInputStreamFactory.hpp
- + src/libmaus2/aio/SecrecyOutputStreamFactory.cpp
- src/libmaus2/irods/IRodsFileBase.hpp → src/libmaus2/aio/SecrecyOutputStreamFactory.hpp
- src/libmaus2/irods/IRodsInputStream.hpp → src/libmaus2/aio/URLObject.hpp
- src/libmaus2/alignment/SimpleLocalAligner.hpp
- src/libmaus2/autoarray/AutoArray.hpp
- src/libmaus2/avl/AVLSet.hpp
- src/libmaus2/bambam/BamBlockWriterBaseFactory.hpp
- src/libmaus2/bambam/parallel/BlockSortControl.hpp
- src/libmaus2/bitio/BitVector.hpp
- src/libmaus2/dazzler/align/AlignmentWriter.hpp
- src/libmaus2/dazzler/align/LasSort2.hpp
- src/libmaus2/dazzler/align/SortingOverlapOutputBuffer.hpp
- src/libmaus2/digest/md5.h
- src/libmaus2/fastx/FastAIndex.hpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/libmaus2/-/commit/9aaebf4882f096b31739f1f1f22ca8bfcef3b155

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