Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
9f1383cd by Andreas Tille at 2020-11-13T13:46:43+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,38 +1,36 @@
-Last-Update: Fri, 13 Nov 2020 01:42:03 +0000
+Last-Update: Fri, 13 Nov 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 176 | {imaging,covid-19} |
- orthanc | 95 | {imaging,covid-19,practice} |
- orthanc-wsi | 52 | {practice,laboratory,imaging,covid-19,oncology,his} |
- gdcm | 32 | {imaging-dev} |
- htsjdk | 29 | {bio-dev} |
+ dcmtk | 174 | {imaging,covid-19} |
+ orthanc | 93 | {imaging,covid-19,practice} |
+ orthanc-wsi | 51 | {practice,laboratory,imaging,covid-19,oncology,his} |
+ gdcm | 33 | {imaging-dev} |
+ htsjdk | 28 | {bio-dev} |
+ dicomscope | 27 | {imaging} |
dicom3tools | 26 | {imaging} |
- dicomscope | 25 | {imaging} |
- gdcm | 22 | {imaging,covid-19} |
- dcm2niix | 21 | {imaging} |
+ gdcm | 23 | {imaging,covid-19} |
+ dcm2niix | 22 | {imaging} |
gnumed-server | 18 | {practice,covid-19} |
gdcm | 16 | {imaging-dev} |
invesalius | 16 | {imaging} |
- pixelmed | 16 | {imaging} |
- biosig | 15 | {physics,imaging} |
+ pixelmed | 15 | {imaging} |
+ biosig | 14 | {physics,imaging} |
minc-tools | 14 | {imaging} |
nifticlib | 14 | {imaging} |
openslide | 13 | {imaging} |
plastimatch | 12 | {imaging} |
vtk-dicom | 12 | {imaging} |
adun.app | 11 | {bio} |
- king | 11 | {imaging,typesetting} |
ngs-sdk | 11 | {bio-dev} |
+ king | 10 | {imaging,typesetting} |
ngs-sdk | 10 | {bio-dev} |
obitools | 10 | {bio} |
nifticlib | 9 | {imaging-dev} |
insighttoolkit4 | 8 | {imaging-dev} |
- multiqc | 7 | {covid-19,bio} |
orthanc-webviewer | 7 | {imaging} |
pymia | 7 | {imaging-dev} |
ea-utils | 6 | {bio} |
- librg-utils-perl | 6 | {bio} |
melting | 6 | {cloud,bio} |
seqsero | 6 | {bio} |
treeview | 6 | {bio,bio-phylogeny} |
@@ -41,18 +39,17 @@ Last-Update: Fri, 13 Nov 2020 01:42:03 +0000
biojava-live | 5 | {bio-dev} |
biomaj3-cli | 5 | {cloud} |
elastix | 5 | {imaging} |
- ngs-sdk | 5 | {bio-dev} |
+ librg-utils-perl | 5 | {bio} |
+ multiqc | 5 | {covid-19,bio} |
rambo-k | 5 | {bio} |
biomaj3-daemon | 4 | {bio} |
bio-tradis | 4 | {bio-dev,bio} |
- busco | 4 | {covid-19,bio} |
dicompyler | 4 | {oncology} |
lagan | 4 | {bio} |
mipe | 4 | {cloud,bio} |
mrs | 4 | {bio} |
orthanc-dicomweb | 4 | {imaging,covid-19} |
phyutility | 4 | {cloud,bio} |
- predictprotein | 4 | {bio} |
sibsim4 | 4 | {cloud,bio} |
stacks | 4 | {bio} |
tracetuner | 4 | {bio} |
@@ -62,15 +59,13 @@ Last-Update: Fri, 13 Nov 2020 01:42:03 +0000
assemblytics | 3 | {bio} |
beast-mcmc | 3 | {bio,bio-phylogeny} |
bitseq | 3 | {bio} |
- brig | 3 | {bio} |
+ busco | 3 | {covid-19,bio} |
clonalframeml | 3 | {covid-19,bio} |
clonalorigin | 3 | {bio} |
- ecopcr | 3 | {bio} |
embassy-domainatrix | 3 | {cloud,bio} |
embassy-domalign | 3 | {cloud,bio} |
estscan | 3 | {bio} |
fastlink | 3 | {bio,cloud} |
- gatb-core | 3 | {bio} |
getdata | 3 | {bio} |
ghmm | 3 | {bio} |
jebl2 | 3 | {bio-dev} |
@@ -78,36 +73,34 @@ Last-Update: Fri, 13 Nov 2020 01:42:03 +0000
lamarc | 3 | {bio} |
libncl | 3 | {bio} |
libsbml | 3 | {bio-dev} |
- mhap | 3 | {bio,bio-ngs} |
- microbegps | 3 | {bio} |
murasaki | 3 | {bio} |
+ ngs-sdk | 3 | {bio-dev} |
orthanc-mysql | 3 | {imaging} |
orthanc-postgresql | 3 | {imaging} |
- paraclu | 3 | {bio,cloud} |
phast | 3 | {bio} |
phybin | 3 | {bio} |
- piler | 3 | {bio} |
+ predictprotein | 3 | {bio} |
prime-phylo | 3 | {cloud,bio} |
quorum | 3 | {bio} |
saint | 3 | {bio} |
- salmon | 3 | {covid-19,bio} |
sight | 3 | {imaging} |
spaced | 3 | {bio} |
staden | 3 | {bio} |
- surankco | 3 | {bio} |
yaha | 3 | {bio} |
zalign | 3 | {cloud,bio} |
atropos | 2 | {bio} |
+ brig | 2 | {bio} |
canu | 2 | {bio} |
cat-bat | 2 | {covid-19,bio} |
delly | 2 | {covid-19,bio} |
dindel | 2 | {bio} |
+ ecopcr | 2 | {bio} |
embassy-domsearch | 2 | {cloud,bio} |
emboss-explorer | 2 | {bio} |
fastml | 2 | {bio} |
fsm-lite | 2 | {bio} |
+ gatb-core | 2 | {bio} |
hinge | 2 | {bio} |
- ipig | 2 | {bio} |
jmodeltest | 2 | {bio,bio-phylogeny} |
libdivsufsort | 2 | {bio-dev} |
libminc | 2 | {imaging-dev} |
@@ -116,10 +109,14 @@ Last-Update: Fri, 13 Nov 2020 01:42:03 +0000
logol | 2 | {bio} |
mauve-aligner | 2 | {bio} |
metaphlan2 | 2 | {bio} |
+ mhap | 2 | {bio,bio-ngs} |
+ microbegps | 2 | {bio} |
nanosv | 2 | {covid-19,bio} |
neobio | 2 | {cloud,bio} |
openslide | 2 | {imaging-dev} |
+ paraclu | 2 | {bio,cloud} |
perm | 2 | {bio,cloud} |
+ piler | 2 | {bio} |
placnet | 2 | {bio} |
plasmidseeker | 2 | {bio} |
proalign | 2 | {bio-phylogeny,bio} |
@@ -130,6 +127,7 @@ Last-Update: Fri, 13 Nov 2020 01:42:03 +0000
rdp-classifier | 2 | {bio} |
rtax | 2 | {cloud,bio} |
runcircos-gui | 2 | {bio} |
+ salmon | 2 | {covid-19,bio} |
samblaster | 2 | {covid-19,bio} |
scrm | 2 | {bio} |
segemehl | 2 | {bio} |
@@ -138,7 +136,7 @@ Last-Update: Fri, 13 Nov 2020 01:42:03 +0000
soapsnp | 2 | {bio} |
sprai | 2 | {bio} |
spread-phy | 2 | {bio-phylogeny,bio} |
- suitename | 2 | {bio} |
+ surankco | 2 | {bio} |
trace2dbest | 2 | {bio} |
yanagiba | 2 | {bio,covid-19} |
acedb | 1 | {bio,cloud} |
@@ -150,9 +148,9 @@ Last-Update: Fri, 13 Nov 2020 01:42:03 +0000
dextractor | 1 | {bio,covid-19} |
emmax | 1 | {bio} |
htscodecs | 1 | {covid-19,bio-dev} |
+ ipig | 1 | {bio} |
kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
- libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
lighter | 1 | {covid-19,bio} |
@@ -162,7 +160,6 @@ Last-Update: Fri, 13 Nov 2020 01:42:03 +0000
papyrus | 1 | {imaging-dev} |
pbdagcon | 1 | {bio} |
pilercr | 1 | {bio} |
- plasmidid | 1 | {covid-19,bio} |
pplacer | 1 | {covid-19,bio-phylogeny,bio} |
samtools-legacy | 1 | {bio-dev} |
simrisc | 1 | {oncology} |
@@ -170,10 +167,12 @@ Last-Update: Fri, 13 Nov 2020 01:42:03 +0000
skewer | 1 | {bio} |
spaln | 1 | {bio,covid-19} |
srf | 1 | {bio-dev} |
+ suitename | 1 | {bio} |
thesias | 1 | {covid-19,bio} |
tophat-recondition | 1 | {bio,covid-19} |
tvc | 1 | {bio} |
varscan | 1 | {covid-19,bio} |
+ vienna-rna | 1 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosig | 0 | {physics} |
@@ -194,6 +193,7 @@ Last-Update: Fri, 13 Nov 2020 01:42:03 +0000
libbpp-raa | 0 | {bio-dev} |
libbpp-seq | 0 | {bio-dev} |
libbpp-seq-omics | 0 | {bio-dev} |
+ libchado-perl | 0 | {bio-dev} |
libdisorder | 0 | {bio-dev} |
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
@@ -223,6 +223,9 @@ Last-Update: Fri, 13 Nov 2020 01:42:03 +0000
pbseqlib | 0 | {bio-dev} |
pigx-rnaseq | 0 | {bio,covid-19} |
pique | 0 | {bio} |
+ plasmidid | 0 | {covid-19,bio} |
+ python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
q2templates | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
@@ -234,12 +237,9 @@ Last-Update: Fri, 13 Nov 2020 01:42:03 +0000
simpleitk | 0 | {imaging-dev} |
smrtanalysis | 0 | {bio,covid-19} |
varna | 0 | {bio} |
- vienna-rna | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
- python-seqcluster | -1 | {bio} |
- python-seqcluster | -1 | {bio-dev,covid-19} |
svim | -1 | {bio} |
(269 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9f1383cdad8e0163b5886c76750229a9c515c948
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9f1383cdad8e0163b5886c76750229a9c515c948
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