[med-svn] [Git][med-team/dawg][master] 8 commits: routine-update: Standards-Version: 4.5.0

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / dawg


Commits:
c49bdf23 by Andreas Tille at 2020-11-16T10:18:13+01:00
routine-update: Standards-Version: 4.5.0

- - - - -
d9c2df6e by Andreas Tille at 2020-11-16T10:18:13+01:00
routine-update: debhelper-compat 13

- - - - -
726f16f1 by Andreas Tille at 2020-11-16T10:19:57+01:00
routine-update: Respect DEB_BUILD_OPTIONS in override_dh_auto_test target

- - - - -
3a222589 by Andreas Tille at 2020-11-16T10:19:58+01:00
routine-update: autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g

- - - - -
efc87c65 by Andreas Tille at 2020-11-16T10:19:58+01:00
routine-update: Add salsa-ci file

- - - - -
6294d673 by Andreas Tille at 2020-11-16T10:19:58+01:00
routine-update: Rules-Requires-Root: no

- - - - -
80785705 by Andreas Tille at 2020-11-16T10:20:01+01:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.

Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html

- - - - -
f677b497 by Andreas Tille at 2020-11-16T10:20:54+01:00
routine-update: Ready to upload to unstable

- - - - -


7 changed files:

- debian/changelog
- − debian/compat
- debian/control
- debian/rules
- + debian/salsa-ci.yml
- debian/tests/run-unit-test
- debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,18 @@
+dawg (1.2-3) unstable; urgency=medium
+
+  * Team upload.
+  * Standards-Version: 4.5.0 (routine-update)
+  * debhelper-compat 13 (routine-update)
+  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine-
+    update)
+  * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update)
+  * Add salsa-ci file (routine-update)
+  * Rules-Requires-Root: no (routine-update)
+  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
+    Repository-Browse.
+
+ -- Andreas Tille <tille at debian.org>  Mon, 16 Nov 2020 10:20:01 +0100
+
 dawg (1.2-2) unstable; urgency=medium
 
   [ Andreas Tille ]


=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11


=====================================
debian/control
=====================================
@@ -3,14 +3,15 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Kevin Murray <spam at kdmurray.id.au>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 13),
                cmake,
                bison,
                flex
-Standards-Version: 4.1.5
+Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/dawg
 Vcs-Git: https://salsa.debian.org/med-team/dawg.git
 Homepage: https://github.com/reedacartwright/dawg
+Rules-Requires-Root: no
 
 Package: dawg
 Architecture: any


=====================================
debian/rules
=====================================
@@ -22,7 +22,7 @@ override_dh_fixperms:
 	chmod -x debian/$(DEB_SOURCE)/usr/share/doc/dawg/examples/*
 
 override_dh_auto_test:
-	# FIXME: This test fails - but let the build pass anyway for the moment
 ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
+	# FIXME: This test fails - but let the build pass anyway for the moment
 	cd tests && PATH=$$PATH:$(BINDIR) sh test0.sh || true
 endif


=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml


=====================================
debian/tests/run-unit-test
=====================================
@@ -2,12 +2,12 @@
 
 pkg=dawg
 
-if [ "$ADTTMP" = "" ] ; then
-  ADTTMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
-  trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM
+if [ "$AUTOPKGTEST_TMP" = "" ] ; then
+  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
+  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
 fi
 
-cd $ADTTMP
+cd $AUTOPKGTEST_TMP
 
 cp -a /usr/share/doc/${pkg}/tests/* .
 find . -type f -name "*.gz" -exec gunzip \{\} \;


=====================================
debian/upstream/metadata
=====================================
@@ -1,3 +1,5 @@
+Bug-Database: https://github.com/reedacartwright/dawg/issues
+Bug-Submit: https://github.com/reedacartwright/dawg/issues/new
 Reference:
   Author: Reed A. Cartwright
   Title: "DNA assembly with gaps (Dawg): simulating sequence evolution"
@@ -21,3 +23,5 @@ Registry:
     Entry: NA
   - Name: conda:bioconda
     Entry: dawg
+Repository: https://github.com/reedacartwright/dawg.git
+Repository-Browse: https://github.com/reedacartwright/dawg



View it on GitLab: https://salsa.debian.org/med-team/dawg/-/compare/c8f83910dade6a17e99e9c42dc0960bb11167cae...f677b497cf96fae679641e6fbc1fcaf3264849cf

-- 
View it on GitLab: https://salsa.debian.org/med-team/dawg/-/compare/c8f83910dade6a17e99e9c42dc0960bb11167cae...f677b497cf96fae679641e6fbc1fcaf3264849cf
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