[med-svn] [Git][med-team/gwama][master] 7 commits: routine-update: Standards-Version: 4.5.0

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / gwama


Commits:
c1cf1d9f by Andreas Tille at 2020-11-16T10:19:28+01:00
routine-update: Standards-Version: 4.5.0

- - - - -
33413b49 by Andreas Tille at 2020-11-16T10:19:28+01:00
routine-update: debhelper-compat 13

- - - - -
d0961818 by Andreas Tille at 2020-11-16T10:19:30+01:00
routine-update: Add salsa-ci file

- - - - -
739edc20 by Andreas Tille at 2020-11-16T10:19:30+01:00
routine-update: Rules-Requires-Root: no

- - - - -
996015e2 by Andreas Tille at 2020-11-16T10:19:35+01:00
Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright).

Changes-By: lintian-brush

- - - - -
69fadfcc by Andreas Tille at 2020-11-16T10:19:35+01:00
Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.

Changes-By: lintian-brush
Fixes: lintian: uses-deprecated-adttmp
See-also: https://lintian.debian.org/tags/uses-deprecated-adttmp.html

- - - - -
da764a86 by Andreas Tille at 2020-11-16T10:20:44+01:00
routine-update: Ready to upload to unstable

- - - - -


6 changed files:

- debian/changelog
- − debian/compat
- debian/control
- + debian/salsa-ci.yml
- debian/tests/run-sample-analysis
- debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,16 @@
+gwama (2.2.2+dfsg-3) unstable; urgency=medium
+
+  * Team upload.
+  * Standards-Version: 4.5.0 (routine-update)
+  * debhelper-compat 13 (routine-update)
+  * Add salsa-ci file (routine-update)
+  * Rules-Requires-Root: no (routine-update)
+  * Remove obsolete fields Contact, Name from debian/upstream/metadata (already
+    present in machine-readable debian/copyright).
+  * Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.
+
+ -- Andreas Tille <tille at debian.org>  Mon, 16 Nov 2020 10:19:35 +0100
+
 gwama (2.2.2+dfsg-2) unstable; urgency=medium
 
   * Add registry references.


=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11


=====================================
debian/control
=====================================
@@ -3,12 +3,13 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Dylan Aïssi <daissi at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11),
+Build-Depends: debhelper-compat (= 13),
                zlib1g-dev
-Standards-Version: 4.1.4
+Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/gwama
 Vcs-Git: https://salsa.debian.org/med-team/gwama.git
 Homepage: https://www.geenivaramu.ee/en/tools/gwama
+Rules-Requires-Root: no
 
 Package: gwama
 Architecture: any


=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml


=====================================
debian/tests/run-sample-analysis
=====================================
@@ -5,11 +5,11 @@
 # Last-Update: 2014-12-24
 
 pkg=gwama
-if [ "$ADTTMP" = "" ] ; then
-  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+if [ "$AUTOPKGTEST_TMP" = "" ] ; then
+  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
 fi
-cd $ADTTMP
-cp -a /usr/share/doc/${pkg}/examples/samples/* $ADTTMP
+cd $AUTOPKGTEST_TMP
+cp -a /usr/share/doc/${pkg}/examples/samples/* $AUTOPKGTEST_TMP
 
 # Fixed analysis
 GWAMA --filelist "gwama.in" --quantitative --output "test_fixed"  --name_marker "SNP" --name_ea "EFFECT_ALLELE" --name_nea "NON_EFFECT_ALLELE"
@@ -19,5 +19,5 @@ diff test_fixed.out fixed.out
 GWAMA --filelist "gwama.in" --quantitative --output "test_random" --random  --name_marker "SNP" --name_ea "EFFECT_ALLELE" --name_nea "NON_EFFECT_ALLELE"
 diff test_random.out random.out
 
-rm -f $ADTTMP/*
+rm -f $AUTOPKGTEST_TMP/*
 


=====================================
debian/upstream/metadata
=====================================
@@ -1,5 +1,3 @@
-Contact: Reedik Mägi <reedik.magi at ut.ee>
-Name: GWAMA
 Reference:
   - Author: Reedik Mägi and Andrew P. Morris
     Title: "GWAMA: software for genome-wide association meta-analysis"



View it on GitLab: https://salsa.debian.org/med-team/gwama/-/compare/e7b7b35d3f0f3533134e6d16f852c9a05c718c37...da764a86b8810067fc33ed4153a3127d4ece4cf4

-- 
View it on GitLab: https://salsa.debian.org/med-team/gwama/-/compare/e7b7b35d3f0f3533134e6d16f852c9a05c718c37...da764a86b8810067fc33ed4153a3127d4ece4cf4
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