Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
8dbe176b by Andreas Tille at 2020-11-16T13:45:36+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,245 +1,248 @@
-Last-Update: Mon, 16 Nov 2020 01:42:03 +0000
+Last-Update: Mon, 16 Nov 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 179 | {imaging,covid-19} |
- orthanc | 93 | {imaging,covid-19,practice} |
- orthanc-wsi | 48 | {practice,laboratory,imaging,covid-19,oncology,his} |
- gdcm | 37 | {imaging-dev} |
- dicom3tools | 26 | {imaging} |
+ dcmtk | 181 | {imaging,covid-19} |
+ orthanc | 95 | {covid-19,imaging,practice} |
+ orthanc-wsi | 50 | {oncology,practice,his,laboratory,covid-19,imaging} |
+ gdcm | 35 | {imaging-dev} |
htsjdk | 26 | {bio-dev} |
dcm2niix | 25 | {imaging} |
- dicomscope | 25 | {imaging} |
- gdcm | 25 | {imaging,covid-19} |
- gnumed-server | 17 | {practice,covid-19} |
- gdcm | 16 | {imaging-dev} |
+ dicom3tools | 25 | {imaging} |
+ dicomscope | 24 | {imaging} |
+ gdcm | 23 | {imaging,covid-19} |
+ gdcm | 17 | {imaging-dev} |
+ gnumed-server | 17 | {covid-19,practice} |
invesalius | 16 | {imaging} |
- pixelmed | 15 | {imaging} |
- biosig | 14 | {physics,imaging} |
+ biosig | 14 | {imaging,physics} |
minc-tools | 14 | {imaging} |
nifticlib | 14 | {imaging} |
+ pixelmed | 14 | {imaging} |
+ adun.app | 13 | {bio} |
ngs-sdk | 13 | {bio-dev} |
openslide | 13 | {imaging} |
- adun.app | 12 | {bio} |
plastimatch | 12 | {imaging} |
- vtk-dicom | 12 | {imaging} |
- king | 11 | {imaging,typesetting} |
+ king | 11 | {typesetting,imaging} |
ngs-sdk | 11 | {bio-dev} |
- nifticlib | 10 | {imaging-dev} |
- insighttoolkit4 | 9 | {imaging-dev} |
+ vtk-dicom | 11 | {imaging} |
+ nifticlib | 9 | {imaging-dev} |
obitools | 9 | {bio} |
- dicompyler | 8 | {oncology} |
+ insighttoolkit4 | 8 | {imaging-dev} |
+ melting | 8 | {cloud,bio} |
+ orthanc-webviewer | 8 | {imaging} |
pymia | 8 | {imaging-dev} |
+ dicompyler | 7 | {oncology} |
ea-utils | 7 | {bio} |
- orthanc-webviewer | 7 | {imaging} |
seqsero | 7 | {bio} |
- melting | 6 | {cloud,bio} |
- treeview | 6 | {bio,bio-phylogeny} |
- bamkit | 5 | {bio,covid-19} |
+ treeview | 7 | {bio-phylogeny,bio} |
+ biojava-live | 6 | {bio-dev} |
+ biomaj3-cli | 6 | {cloud} |
+ librg-utils-perl | 6 | {bio} |
bart-view | 5 | {imaging} |
- biojava-live | 5 | {bio-dev} |
- biomaj3-cli | 5 | {cloud} |
- librg-utils-perl | 5 | {bio} |
- multiqc | 5 | {covid-19,bio} |
+ biomaj3-daemon | 5 | {bio} |
+ bio-tradis | 5 | {bio,bio-dev} |
+ elastix | 5 | {imaging} |
+ lagan | 5 | {bio} |
+ libsbml | 5 | {bio-dev} |
+ mipe | 5 | {cloud,bio} |
+ multiqc | 5 | {bio,covid-19} |
+ ngs-sdk | 5 | {bio-dev} |
+ orthanc-dicomweb | 5 | {imaging,covid-19} |
+ phyutility | 5 | {cloud,bio} |
rambo-k | 5 | {bio} |
- staden | 5 | {bio} |
+ sibsim4 | 5 | {cloud,bio} |
+ stacks | 5 | {bio} |
+ tracetuner | 5 | {bio} |
alter-sequence-alignment | 4 | {bio} |
- biomaj3-daemon | 4 | {bio} |
- bio-tradis | 4 | {bio-dev,bio} |
- elastix | 4 | {imaging} |
- lagan | 4 | {bio} |
- libsbml | 4 | {bio-dev} |
- mipe | 4 | {cloud,bio} |
- ngs-sdk | 4 | {bio-dev} |
- orthanc-dicomweb | 4 | {imaging,covid-19} |
- phyutility | 4 | {cloud,bio} |
- sibsim4 | 4 | {cloud,bio} |
- stacks | 4 | {bio} |
- tracetuner | 4 | {bio} |
- anfo | 3 | {cloud,bio} |
- arden | 3 | {cloud,bio} |
- assemblytics | 3 | {bio} |
- beast-mcmc | 3 | {bio,bio-phylogeny} |
- bitseq | 3 | {bio} |
+ anfo | 4 | {bio,cloud} |
+ arden | 4 | {bio,cloud} |
+ assemblytics | 4 | {bio} |
+ bamkit | 4 | {bio,covid-19} |
+ beast-mcmc | 4 | {bio-phylogeny,bio} |
+ bitseq | 4 | {bio} |
+ clonalframeml | 4 | {bio,covid-19} |
+ clonalorigin | 4 | {bio} |
+ embassy-domainatrix | 4 | {cloud,bio} |
+ embassy-domalign | 4 | {cloud,bio} |
+ estscan | 4 | {bio} |
+ fastlink | 4 | {cloud,bio} |
+ getdata | 4 | {bio} |
+ ghmm | 4 | {bio} |
+ jebl2 | 4 | {bio-dev} |
+ jellyfish1 | 4 | {bio} |
+ lamarc | 4 | {bio} |
+ libncl | 4 | {bio} |
+ mrs | 4 | {bio} |
+ murasaki | 4 | {bio} |
+ orthanc-mysql | 4 | {imaging} |
+ orthanc-postgresql | 4 | {imaging} |
+ phast | 4 | {bio} |
+ phybin | 4 | {bio} |
+ predictprotein | 4 | {bio} |
+ quorum | 4 | {bio} |
+ saint | 4 | {bio} |
+ spaced | 4 | {bio} |
+ staden | 4 | {bio} |
+ yaha | 4 | {bio} |
+ zalign | 4 | {cloud,bio} |
+ brig | 3 | {bio} |
busco | 3 | {covid-19,bio} |
- clonalframeml | 3 | {covid-19,bio} |
- clonalorigin | 3 | {bio} |
- embassy-domainatrix | 3 | {cloud,bio} |
- embassy-domalign | 3 | {cloud,bio} |
- estscan | 3 | {bio} |
- fastlink | 3 | {bio,cloud} |
- getdata | 3 | {bio} |
- ghmm | 3 | {bio} |
- jebl2 | 3 | {bio-dev} |
- jellyfish1 | 3 | {bio} |
- lamarc | 3 | {bio} |
- libncl | 3 | {bio} |
+ canu | 3 | {bio} |
+ delly | 3 | {covid-19,bio} |
+ dindel | 3 | {bio} |
+ ecopcr | 3 | {bio} |
+ embassy-domsearch | 3 | {cloud,bio} |
+ emboss-explorer | 3 | {bio} |
+ fastml | 3 | {bio} |
+ fsm-lite | 3 | {bio} |
+ gatb-core | 3 | {bio} |
+ hinge | 3 | {bio} |
+ jmodeltest | 3 | {bio,bio-phylogeny} |
+ libdivsufsort | 3 | {bio-dev} |
libpal-java | 3 | {bio-dev} |
- mrs | 3 | {bio} |
- murasaki | 3 | {bio} |
- orthanc-mysql | 3 | {imaging} |
- orthanc-postgresql | 3 | {imaging} |
- phast | 3 | {bio} |
- phybin | 3 | {bio} |
- predictprotein | 3 | {bio} |
- prottest | 3 | {bio-phylogeny,bio} |
- quorum | 3 | {bio} |
- saint | 3 | {bio} |
- spaced | 3 | {bio} |
- yaha | 3 | {bio} |
- zalign | 3 | {cloud,bio} |
+ librdp-taxonomy-tree-java | 3 | {bio-dev} |
+ logol | 3 | {bio} |
+ mauve-aligner | 3 | {bio} |
+ metaphlan2 | 3 | {bio} |
+ mhap | 3 | {bio-ngs,bio} |
+ microbegps | 3 | {bio} |
+ neobio | 3 | {bio,cloud} |
+ paraclu | 3 | {cloud,bio} |
+ perm | 3 | {bio,cloud} |
+ piler | 3 | {bio} |
+ placnet | 3 | {bio} |
+ plasmidseeker | 3 | {bio} |
+ prime-phylo | 3 | {bio,cloud} |
+ proalign | 3 | {bio-phylogeny,bio} |
+ prottest | 3 | {bio,bio-phylogeny} |
+ pscan-chip | 3 | {bio} |
+ qcumber | 3 | {bio} |
+ rdp-alignment | 3 | {bio} |
+ rdp-classifier | 3 | {bio} |
+ rtax | 3 | {bio,cloud} |
+ runcircos-gui | 3 | {bio} |
+ salmon | 3 | {covid-19,bio} |
+ samblaster | 3 | {covid-19,bio} |
+ scrm | 3 | {bio} |
+ segemehl | 3 | {bio} |
+ sga | 3 | {bio} |
+ sight | 3 | {imaging} |
+ soapaligner | 3 | {bio} |
+ soapsnp | 3 | {bio} |
+ sprai | 3 | {bio} |
+ spread-phy | 3 | {bio-phylogeny,bio} |
+ surankco | 3 | {bio} |
+ trace2dbest | 3 | {bio} |
atropos | 2 | {bio} |
- brig | 2 | {bio} |
- canu | 2 | {bio} |
+ bbmap | 2 | {covid-19,bio} |
+ biosig | 2 | {imaging-dev,physics} |
cat-bat | 2 | {covid-19,bio} |
ctn | 2 | {imaging-dev} |
- delly | 2 | {covid-19,bio} |
- dindel | 2 | {bio} |
- ecopcr | 2 | {bio} |
- embassy-domsearch | 2 | {cloud,bio} |
- emboss-explorer | 2 | {bio} |
emmax | 2 | {bio} |
- fastml | 2 | {bio} |
- fsm-lite | 2 | {bio} |
- gatb-core | 2 | {bio} |
- hinge | 2 | {bio} |
- jmodeltest | 2 | {bio,bio-phylogeny} |
- libdivsufsort | 2 | {bio-dev} |
+ ipig | 2 | {bio} |
+ libbio-mage-utils-perl | 2 | {bio-dev} |
libminc | 2 | {imaging-dev} |
- librdp-taxonomy-tree-java | 2 | {bio-dev} |
- logol | 2 | {bio} |
- mauve-aligner | 2 | {bio} |
- metaphlan2 | 2 | {bio} |
- mhap | 2 | {bio,bio-ngs} |
- microbegps | 2 | {bio} |
+ libmuscle | 2 | {bio-dev} |
nanosv | 2 | {covid-19,bio} |
- neobio | 2 | {cloud,bio} |
opencfu | 2 | {laboratory} |
openslide | 2 | {imaging-dev} |
papyrus | 2 | {imaging-dev} |
- paraclu | 2 | {bio,cloud} |
- perm | 2 | {bio,cloud} |
- piler | 2 | {bio} |
- placnet | 2 | {bio} |
- plasmidseeker | 2 | {bio} |
- prime-phylo | 2 | {cloud,bio} |
- proalign | 2 | {bio-phylogeny,bio} |
- pscan-chip | 2 | {bio} |
- qcumber | 2 | {bio} |
- rdp-alignment | 2 | {bio} |
- rdp-classifier | 2 | {bio} |
- rtax | 2 | {cloud,bio} |
- runcircos-gui | 2 | {bio} |
- salmon | 2 | {covid-19,bio} |
- samblaster | 2 | {covid-19,bio} |
- scrm | 2 | {bio} |
- segemehl | 2 | {bio} |
- sga | 2 | {bio} |
- sight | 2 | {imaging} |
- soapaligner | 2 | {bio} |
- soapsnp | 2 | {bio} |
- sprai | 2 | {bio} |
- spread-phy | 2 | {bio-phylogeny,bio} |
- surankco | 2 | {bio} |
- trace2dbest | 2 | {bio} |
- yanagiba | 2 | {bio,covid-19} |
- bbmap | 1 | {bio,covid-19} |
+ pbdagcon | 2 | {bio} |
+ srf | 2 | {bio-dev} |
+ suitename | 2 | {bio} |
+ thesias | 2 | {covid-19,bio} |
+ tvc | 2 | {bio} |
+ yanagiba | 2 | {covid-19,bio} |
+ bambamc | 1 | {bio-dev} |
biosig | 1 | {physics,imaging-dev} |
+ blasr | 1 | {bio-ngs,bio} |
blimps | 1 | {bio} |
- bustools | 1 | {covid-19,bio} |
+ bustools | 1 | {bio,covid-19} |
cufflinks | 1 | {bio,cloud} |
- dextractor | 1 | {bio,covid-19} |
- htscodecs | 1 | {covid-19,bio-dev} |
- ipig | 1 | {bio} |
+ dextractor | 1 | {covid-19,bio} |
+ gatb-core | 1 | {bio-dev} |
+ htscodecs | 1 | {bio-dev,covid-19} |
kmerresistance | 1 | {bio} |
- libbio-mage-utils-perl | 1 | {bio-dev} |
+ libbpp-core | 1 | {bio-dev} |
+ libbpp-phyl | 1 | {bio-dev} |
+ libbpp-phyl-omics | 1 | {bio-dev} |
+ libbpp-popgen | 1 | {bio-dev} |
+ libbpp-raa | 1 | {bio-dev} |
+ libbpp-seq | 1 | {bio-dev} |
+ libbpp-seq-omics | 1 | {bio-dev} |
+ libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
- libmuscle | 1 | {bio-dev} |
+ libdisorder | 1 | {bio-dev} |
+ libgenome | 1 | {bio-dev} |
+ libgkarrays | 1 | {bio-dev} |
+ libhmsbeagle | 1 | {bio-dev} |
+ libmems | 1 | {bio-dev} |
+ libncl | 1 | {bio-dev} |
+ libqes | 1 | {bio-dev} |
+ libseqlib | 1 | {bio-dev} |
+ libstatgen | 1 | {bio-dev} |
lighter | 1 | {covid-19,bio} |
+ murasaki | 1 | {bio} |
+ ncbi-vdb | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
- oscar | 1 | {practice,tools,data} |
- pbdagcon | 1 | {bio} |
+ oscar | 1 | {tools,data,practice} |
+ pbseqlib | 1 | {bio-dev} |
pilercr | 1 | {bio} |
- pplacer | 1 | {covid-19,bio-phylogeny,bio} |
+ pplacer | 1 | {bio,bio-phylogeny,covid-19} |
samtools-legacy | 1 | {bio-dev} |
+ seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
+ simpleitk | 1 | {imaging-dev} |
simrisc | 1 | {oncology} |
skesa | 1 | {bio} |
skewer | 1 | {bio} |
- spaln | 1 | {bio,covid-19} |
- srf | 1 | {bio-dev} |
- suitename | 1 | {bio} |
- thesias | 1 | {covid-19,bio} |
+ spaln | 1 | {covid-19,bio} |
tophat-recondition | 1 | {bio,covid-19} |
- tvc | 1 | {bio} |
- varscan | 1 | {covid-19,bio} |
- vienna-rna | 1 | {covid-19,bio} |
- vtk-dicom | 1 | {imaging-dev} |
- acedb | 0 | {bio,cloud} |
- bambamc | 0 | {bio-dev} |
+ varscan | 1 | {bio,covid-19} |
+ vienna-rna | 1 | {bio,covid-19} |
+ acedb | 0 | {cloud,bio} |
biojava4-live | 0 | {bio-dev} |
biosig | 0 | {physics} |
biosyntax | 0 | {bio} |
- blasr | 0 | {bio-ngs,bio} |
camp | 0 | {imaging-dev} |
fis-gtm | 0 | {his} |
- gatb-core | 0 | {bio-dev} |
- intake | 0 | {bio,bio-dev} |
+ intake | 0 | {bio-dev,bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
- libbpp-core | 0 | {bio-dev} |
- libbpp-phyl | 0 | {bio-dev} |
- libbpp-phyl-omics | 0 | {bio-dev} |
- libbpp-popgen | 0 | {bio-dev} |
- libbpp-raa | 0 | {bio-dev} |
- libbpp-seq | 0 | {bio-dev} |
- libbpp-seq-omics | 0 | {bio-dev} |
- libchado-perl | 0 | {bio-dev} |
- libdisorder | 0 | {bio-dev} |
- libgenome | 0 | {bio-dev} |
- libgkarrays | 0 | {bio-dev} |
- libhmsbeagle | 0 | {bio-dev} |
libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {bio-dev,covid-19} |
- libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
- libncl | 0 | {bio-dev} |
libpsortb | 0 | {bio-dev} |
- libqes | 0 | {bio-dev} |
- libseqlib | 0 | {bio-dev} |
- libstatgen | 0 | {bio-dev} |
libvistaio | 0 | {imaging-dev} |
libxdf | 0 | {imaging-dev} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {bio-dev,covid-19} |
- murasaki | 0 | {bio} |
- ncbi-vdb | 0 | {bio-dev} |
+ milib | 0 | {covid-19,bio-dev} |
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- pigx-rnaseq | 0 | {bio,covid-19} |
+ pigx-rnaseq | 0 | {covid-19,bio} |
pique | 0 | {bio} |
- plasmidid | 0 | {covid-19,bio} |
+ plasmidid | 0 | {bio,covid-19} |
python-seqcluster | 0 | {bio} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
q2templates | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
- seqan | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
- shovill | 0 | {bio,covid-19} |
+ shovill | 0 | {covid-19,bio} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
smrtanalysis | 0 | {bio,covid-19} |
varna | 0 | {bio} |
+ vtk-dicom | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
svim | -1 | {bio} |
-(269 rows)
+(272 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8dbe176bb400ac8c79c2baf42c51eb34d5d5f3f6
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