[med-svn] [Git][med-team/samtools-legacy][master] 11 commits: Revert last commit
Andreas Tille
gitlab at salsa.debian.org
Mon Nov 16 17:52:01 GMT 2020
Andreas Tille pushed to branch master at Debian Med / samtools-legacy
Commits:
7e0cbb01 by Andreas Tille at 2020-11-16T18:44:57+01:00
Revert last commit
- - - - -
c1f2902e by Andreas Tille at 2020-11-16T18:45:20+01:00
routine-update: Standards-Version: 4.5.0
- - - - -
5a93cf61 by Andreas Tille at 2020-11-16T18:45:20+01:00
routine-update: debhelper-compat 13
- - - - -
7ccf303d by Andreas Tille at 2020-11-16T18:45:25+01:00
routine-update: Remove trailing whitespace in debian/changelog
- - - - -
7a19c9e8 by Andreas Tille at 2020-11-16T18:45:25+01:00
routine-update: Remove trailing whitespace in debian/copyright
- - - - -
50034fc6 by Andreas Tille at 2020-11-16T18:45:25+01:00
routine-update: Add salsa-ci file
- - - - -
8c859248 by Andreas Tille at 2020-11-16T18:45:25+01:00
routine-update: Rules-Requires-Root: no
- - - - -
99dc823a by Andreas Tille at 2020-11-16T18:45:27+01:00
Use secure URI in Homepage field.
Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html
- - - - -
29d00e34 by Andreas Tille at 2020-11-16T18:45:28+01:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
- - - - -
1106dd48 by Andreas Tille at 2020-11-16T18:50:23+01:00
Do not mention removed files in d/copyright any more
- - - - -
368be378 by Andreas Tille at 2020-11-16T18:51:45+01:00
Upload to unstable
- - - - -
6 changed files:
- debian/changelog
- − debian/compat
- debian/control
- debian/copyright
- + debian/salsa-ci.yml
- debian/upstream/metadata
Changes:
=====================================
debian/changelog
=====================================
@@ -1,11 +1,20 @@
-samtools-legacy (0.1.19+dfsg-1) UNRELEASED; urgency=medium
+samtools-legacy (0.1.19+dfsg-1) unstable; urgency=medium
* Team upload.
* Drop debian/gbp.conf after creating separate repository
* Move packaging to separate repository samtools-legacy
* Drop win32 binaries from upstream source tarball
-
- -- Andreas Tille <tille at debian.org> Mon, 16 Nov 2020 18:02:03 +0100
+ * Standards-Version: 4.5.0 (routine-update)
+ * debhelper-compat 13 (routine-update)
+ * Remove trailing whitespace in debian/changelog (routine-update)
+ * Remove trailing whitespace in debian/copyright (routine-update)
+ * Add salsa-ci file (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ * Use secure URI in Homepage field.
+ * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
+ Repository-Browse.
+
+ -- Andreas Tille <tille at debian.org> Mon, 16 Nov 2020 18:50:39 +0100
samtools-legacy (0.1.19-4) unstable; urgency=medium
@@ -78,7 +87,7 @@ samtools (0.1.18-4) unstable; urgency=low
samtools (0.1.18-3) unstable; urgency=low
- * upload 0.1.18-2 closed the wrong bug, correction:
+ * upload 0.1.18-2 closed the wrong bug, correction:
* added patch to fix segfault in mpileup (Closes: #653042)
* added patch to fix coverage cap (Closes: #671524)
=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11
=====================================
debian/control
=====================================
@@ -3,13 +3,14 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
Uploaders: Charles Plessy <plessy at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 13),
libncurses5-dev,
zlib1g-dev
-Standards-Version: 4.1.5
-Vcs-Browser: https://salsa.debian.org/med-team/samtools-legacy_real
-Vcs-Git: https://salsa.debian.org/med-team/samtools-legacy_real.git
-Homepage: http://www.htslib.org/
+Standards-Version: 4.5.0
+Vcs-Browser: https://salsa.debian.org/med-team/samtools-legacy
+Vcs-Git: https://salsa.debian.org/med-team/samtools-legacy.git
+Homepage: https://www.htslib.org/
+Rules-Requires-Root: no
Package: libbam-dev
Architecture: any
=====================================
debian/copyright
=====================================
@@ -26,7 +26,7 @@ License: NetBSD-similar
2. Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in the
documentation and/or other materials provided with the distribution..
- .
+ .
THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
@@ -47,7 +47,7 @@ License: MD5-fourmilab
The algorithm is due to Ron Rivest. This code was
written by Colin Plumb in 1993, no copyright is claimed.
This code is in the public domain; do with it what you wish.
- .
+ .
Equivalent code is available from RSA Data Security, Inc.
This code has been tested against that, and is equivalent,
except that you don't need to include two pages of legalese
@@ -58,34 +58,6 @@ License: MD5-fourmilab
needed on buffers full of bytes, and then call MD5Final, which
will fill a supplied 16-byte array with the digest.
-Files: win32/xcurses.h win32/libcurses.a
-Copyright: Public Domain
-License: public-domain
- This file is part of PDCurses (http://pdcurses.sourceforge.net/),
- which is in the public domain.
-
-Files: win32/z*.h win32/libz.a
-Copyright: © 1995-2005 Jean-loup Gailly and Mark Adler
-License: zlib
- This software is provided 'as-is', without any express or implied
- warranty. In no event will the authors be held liable for any damages
- arising from the use of this software.
- .
- Permission is granted to anyone to use this software for any purpose,
- including commercial applications, and to alter it and redistribute it
- freely, subject to the following restrictions:
- .
- 1. The origin of this software must not be misrepresented; you must not
- claim that you wrote the original software. If you use this software
- in a product, an acknowledgment in the product documentation would be
- appreciated but is not required.
- 2. Altered source versions must be plainly marked as such, and must not be
- misrepresented as being the original software.
- 3. This notice may not be removed or altered from any source distribution.
- .
- Jean-loup Gailly Mark Adler
- jloup at gzip.org madler at alumni.caltech.edu
-
License: MIT
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
@@ -93,7 +65,7 @@ License: MIT
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:
- .
+ .
The above copyright notice and this permission notice shall be included in
all copies or substantial portions of the Software.
.
=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
=====================================
debian/upstream/metadata
=====================================
@@ -1,3 +1,5 @@
+Bug-Database: https://github.com/samtools/samtools/issues
+Bug-Submit: https://github.com/samtools/samtools/issues/new
Reference:
author: Heng Li and Bob Handsaker and Alec Wysoker and Tim Fennell and Jue Ruan and Nils Homer and Gabor Marth and Goncalo Abecasis and Richard Durbin and 1000 Genome Project Data Processing Subgroup
title: The Sequence Alignment/Map (SAM) Format and SAMtools
@@ -10,4 +12,5 @@ Reference:
year: 2009
URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btp352v1
eprint: http://bioinformatics.oxfordjournals.org/cgi/reprint/btp352v1.pdf
-Repository: https://github.com/samtools/samtools
+Repository: https://github.com/samtools/samtools.git
+Repository-Browse: https://github.com/samtools/samtools
View it on GitLab: https://salsa.debian.org/med-team/samtools-legacy/-/compare/5d1d27686be333f9ef2e88fdffc2b1353941c4e3...368be378d9ba419c664a00c8b60b893eda236262
--
View it on GitLab: https://salsa.debian.org/med-team/samtools-legacy/-/compare/5d1d27686be333f9ef2e88fdffc2b1353941c4e3...368be378d9ba419c664a00c8b60b893eda236262
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