Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
821939f7 by Andreas Tille at 2020-11-17T13:45:04+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,104 +1,103 @@
-Last-Update: Tue, 17 Nov 2020 01:42:03 +0000
+Last-Update: Tue, 17 Nov 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 181 | {imaging,covid-19} |
- orthanc | 95 | {covid-19,imaging,practice} |
+ orthanc | 96 | {covid-19,imaging,practice} |
orthanc-wsi | 50 | {oncology,practice,his,laboratory,covid-19,imaging} |
- gdcm | 35 | {imaging-dev} |
- htsjdk | 26 | {bio-dev} |
- dcm2niix | 25 | {imaging} |
- dicom3tools | 25 | {imaging} |
- dicomscope | 24 | {imaging} |
- gdcm | 23 | {imaging,covid-19} |
+ gdcm | 37 | {imaging-dev} |
+ dicomscope | 27 | {imaging} |
+ htsjdk | 25 | {bio-dev} |
+ dcm2niix | 24 | {imaging} |
+ dicom3tools | 24 | {imaging} |
+ gdcm | 21 | {imaging,covid-19} |
gdcm | 17 | {imaging-dev} |
- gnumed-server | 17 | {covid-19,practice} |
+ gnumed-server | 16 | {covid-19,practice} |
invesalius | 16 | {imaging} |
- biosig | 14 | {imaging,physics} |
- minc-tools | 14 | {imaging} |
- nifticlib | 14 | {imaging} |
- pixelmed | 14 | {imaging} |
- adun.app | 13 | {bio} |
+ minc-tools | 13 | {imaging} |
ngs-sdk | 13 | {bio-dev} |
+ nifticlib | 13 | {imaging} |
openslide | 13 | {imaging} |
+ pixelmed | 13 | {imaging} |
+ adun.app | 12 | {bio} |
+ biosig | 12 | {imaging,physics} |
plastimatch | 12 | {imaging} |
king | 11 | {typesetting,imaging} |
- ngs-sdk | 11 | {bio-dev} |
vtk-dicom | 11 | {imaging} |
+ ngs-sdk | 10 | {bio-dev} |
nifticlib | 9 | {imaging-dev} |
- obitools | 9 | {bio} |
insighttoolkit4 | 8 | {imaging-dev} |
- melting | 8 | {cloud,bio} |
+ obitools | 8 | {bio} |
orthanc-webviewer | 8 | {imaging} |
pymia | 8 | {imaging-dev} |
dicompyler | 7 | {oncology} |
ea-utils | 7 | {bio} |
+ melting | 7 | {cloud,bio} |
seqsero | 7 | {bio} |
treeview | 7 | {bio-phylogeny,bio} |
- biojava-live | 6 | {bio-dev} |
- biomaj3-cli | 6 | {cloud} |
librg-utils-perl | 6 | {bio} |
+ multiqc | 6 | {bio,covid-19} |
bart-view | 5 | {imaging} |
- biomaj3-daemon | 5 | {bio} |
+ biojava-live | 5 | {bio-dev} |
+ biomaj3-cli | 5 | {cloud} |
bio-tradis | 5 | {bio,bio-dev} |
elastix | 5 | {imaging} |
- lagan | 5 | {bio} |
libsbml | 5 | {bio-dev} |
- mipe | 5 | {cloud,bio} |
- multiqc | 5 | {bio,covid-19} |
ngs-sdk | 5 | {bio-dev} |
orthanc-dicomweb | 5 | {imaging,covid-19} |
phyutility | 5 | {cloud,bio} |
rambo-k | 5 | {bio} |
- sibsim4 | 5 | {cloud,bio} |
- stacks | 5 | {bio} |
- tracetuner | 5 | {bio} |
- alter-sequence-alignment | 4 | {bio} |
anfo | 4 | {bio,cloud} |
arden | 4 | {bio,cloud} |
assemblytics | 4 | {bio} |
bamkit | 4 | {bio,covid-19} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
+ biomaj3-daemon | 4 | {bio} |
bitseq | 4 | {bio} |
clonalframeml | 4 | {bio,covid-19} |
clonalorigin | 4 | {bio} |
embassy-domainatrix | 4 | {cloud,bio} |
embassy-domalign | 4 | {cloud,bio} |
- estscan | 4 | {bio} |
- fastlink | 4 | {cloud,bio} |
getdata | 4 | {bio} |
- ghmm | 4 | {bio} |
jebl2 | 4 | {bio-dev} |
- jellyfish1 | 4 | {bio} |
+ lagan | 4 | {bio} |
lamarc | 4 | {bio} |
libncl | 4 | {bio} |
+ mipe | 4 | {cloud,bio} |
mrs | 4 | {bio} |
- murasaki | 4 | {bio} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
+ paraclu | 4 | {cloud,bio} |
phast | 4 | {bio} |
phybin | 4 | {bio} |
predictprotein | 4 | {bio} |
quorum | 4 | {bio} |
saint | 4 | {bio} |
+ salmon | 4 | {covid-19,bio} |
+ sibsim4 | 4 | {cloud,bio} |
spaced | 4 | {bio} |
+ stacks | 4 | {bio} |
staden | 4 | {bio} |
- yaha | 4 | {bio} |
+ tracetuner | 4 | {bio} |
zalign | 4 | {cloud,bio} |
+ atropos | 3 | {bio} |
brig | 3 | {bio} |
busco | 3 | {covid-19,bio} |
canu | 3 | {bio} |
- delly | 3 | {covid-19,bio} |
dindel | 3 | {bio} |
ecopcr | 3 | {bio} |
embassy-domsearch | 3 | {cloud,bio} |
emboss-explorer | 3 | {bio} |
+ estscan | 3 | {bio} |
+ fastlink | 3 | {cloud,bio} |
fastml | 3 | {bio} |
fsm-lite | 3 | {bio} |
- gatb-core | 3 | {bio} |
+ ghmm | 3 | {bio} |
hinge | 3 | {bio} |
+ jellyfish1 | 3 | {bio} |
jmodeltest | 3 | {bio,bio-phylogeny} |
libdivsufsort | 3 | {bio-dev} |
+ libminc | 3 | {imaging-dev} |
libpal-java | 3 | {bio-dev} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
logol | 3 | {bio} |
@@ -106,12 +105,9 @@ Last-Update: Tue, 17 Nov 2020 01:42:03 +0000
metaphlan2 | 3 | {bio} |
mhap | 3 | {bio-ngs,bio} |
microbegps | 3 | {bio} |
- neobio | 3 | {bio,cloud} |
- paraclu | 3 | {cloud,bio} |
perm | 3 | {bio,cloud} |
piler | 3 | {bio} |
placnet | 3 | {bio} |
- plasmidseeker | 3 | {bio} |
prime-phylo | 3 | {bio,cloud} |
proalign | 3 | {bio-phylogeny,bio} |
prottest | 3 | {bio,bio-phylogeny} |
@@ -121,10 +117,8 @@ Last-Update: Tue, 17 Nov 2020 01:42:03 +0000
rdp-classifier | 3 | {bio} |
rtax | 3 | {bio,cloud} |
runcircos-gui | 3 | {bio} |
- salmon | 3 | {covid-19,bio} |
samblaster | 3 | {covid-19,bio} |
scrm | 3 | {bio} |
- segemehl | 3 | {bio} |
sga | 3 | {bio} |
sight | 3 | {imaging} |
soapaligner | 3 | {bio} |
@@ -132,26 +126,28 @@ Last-Update: Tue, 17 Nov 2020 01:42:03 +0000
sprai | 3 | {bio} |
spread-phy | 3 | {bio-phylogeny,bio} |
surankco | 3 | {bio} |
- trace2dbest | 3 | {bio} |
- atropos | 2 | {bio} |
+ yaha | 3 | {bio} |
bbmap | 2 | {covid-19,bio} |
biosig | 2 | {imaging-dev,physics} |
cat-bat | 2 | {covid-19,bio} |
ctn | 2 | {imaging-dev} |
+ delly | 2 | {covid-19,bio} |
emmax | 2 | {bio} |
+ gatb-core | 2 | {bio} |
ipig | 2 | {bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
- libminc | 2 | {imaging-dev} |
libmuscle | 2 | {bio-dev} |
nanosv | 2 | {covid-19,bio} |
opencfu | 2 | {laboratory} |
openslide | 2 | {imaging-dev} |
papyrus | 2 | {imaging-dev} |
pbdagcon | 2 | {bio} |
+ plasmidseeker | 2 | {bio} |
+ segemehl | 2 | {bio} |
srf | 2 | {bio-dev} |
suitename | 2 | {bio} |
thesias | 2 | {covid-19,bio} |
- tvc | 2 | {bio} |
+ trace2dbest | 2 | {bio} |
yanagiba | 2 | {covid-19,bio} |
bambamc | 1 | {bio-dev} |
biosig | 1 | {physics,imaging-dev} |
@@ -181,8 +177,6 @@ Last-Update: Tue, 17 Nov 2020 01:42:03 +0000
libqes | 1 | {bio-dev} |
libseqlib | 1 | {bio-dev} |
libstatgen | 1 | {bio-dev} |
- lighter | 1 | {covid-19,bio} |
- murasaki | 1 | {bio} |
ncbi-vdb | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
oscar | 1 | {tools,data,practice} |
@@ -198,6 +192,7 @@ Last-Update: Tue, 17 Nov 2020 01:42:03 +0000
skewer | 1 | {bio} |
spaln | 1 | {covid-19,bio} |
tophat-recondition | 1 | {bio,covid-19} |
+ tvc | 1 | {bio} |
varscan | 1 | {bio,covid-19} |
vienna-rna | 1 | {bio,covid-19} |
acedb | 0 | {cloud,bio} |
@@ -244,5 +239,5 @@ Last-Update: Tue, 17 Nov 2020 01:42:03 +0000
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
svim | -1 | {bio} |
-(272 rows)
+(267 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/821939f7a7aa19e0a3b80748731520ac82646e3b
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/821939f7a7aa19e0a3b80748731520ac82646e3b
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