[med-svn] [Git][med-team/libmaus2][master] add spelling-error-in-header.patch

[Étienne Mollier]

Étienne Mollier pushed to branch master at Debian Med / libmaus2


Commits:
be6f8364 by Étienne Mollier at 2020-11-18T15:30:41+01:00
add spelling-error-in-header.patch

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/series
- + debian/patches/spelling-error-in-header.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+libmaus2 (2.0.766+dfsg-2) UNRELEASED; urgency=medium
+
+  * Add spelling-error-in-header.patch to fix spelling-error-in-binary affecting
+    biobambam2.
+
+ -- Étienne Mollier <etienne.mollier at mailoo.org>  Wed, 18 Nov 2020 13:52:56 +0100
+
 libmaus2 (2.0.766+dfsg-1) unstable; urgency=medium
 
   * New upstream version


=====================================
debian/patches/series
=====================================
@@ -0,0 +1 @@
+spelling-error-in-header.patch


=====================================
debian/patches/spelling-error-in-header.patch
=====================================
@@ -0,0 +1,51 @@
+Description: fix spelling error in header files
+ This is causing lintian reports spelling-error-in-binary in biobambam2.
+Author: Étienne Mollier <etienne.mollier at mailoo.org>
+Forwarded: no
+Last-Update: 2020-11-18
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- libmaus2.orig/src/libmaus2/bambam/BamHeaderLowMem.hpp
++++ libmaus2/src/libmaus2/bambam/BamHeaderLowMem.hpp
+@@ -699,7 +699,7 @@
+ 						if ( ! isi )
+ 						{
+ 							::libmaus2::exception::LibMausException se;
+-							se.getStream() << "BamHeaderLowMem: defect @PG line with non-existant parent " << std::string(text+parstart,text+parend) << ":\n" << PLA->getLine(text,lineid) << std::endl;
++							se.getStream() << "BamHeaderLowMem: defect @PG line with non-existent parent " << std::string(text+parstart,text+parend) << ":\n" << PLA->getLine(text,lineid) << std::endl;
+ 							se.finish();
+ 							throw se;
+ 						}
+--- libmaus2.orig/src/libmaus2/bambam/HeaderLine.hpp
++++ libmaus2/src/libmaus2/bambam/HeaderLine.hpp
+@@ -129,7 +129,7 @@
+ 				if ( ! hasKey(key) )
+ 				{
+ 					::libmaus2::exception::LibMausException se;
+-					se.getStream() << "bambam::HeaderLine::getValue called for non existant key: " << key << " for line of type " << type << std::endl;
++					se.getStream() << "bambam::HeaderLine::getValue called for non existent key: " << key << " for line of type " << type << std::endl;
+ 					se.finish();
+ 					throw se;
+ 				}
+--- libmaus2.orig/src/libmaus2/fastx/FastABgzfIndex.hpp
++++ libmaus2/src/libmaus2/fastx/FastABgzfIndex.hpp
+@@ -98,7 +98,7 @@
+ 				if ( i < 0 )
+ 				{
+ 					libmaus2::exception::LibMausException ex;
+-					ex.getStream() << "::libmaus2::fastx::FastABgzfIndexEntry::operator[] called for non existant id" << std::endl;
++					ex.getStream() << "::libmaus2::fastx::FastABgzfIndexEntry::operator[] called for non existent id" << std::endl;
+ 					ex.finish();
+ 					throw ex;
+ 				}
+--- libmaus2.orig/src/test/testAIO.cpp
++++ libmaus2/src/test/testAIO.cpp
+@@ -255,7 +255,7 @@
+ 
+ void testPosixFdOverwrite()
+ {
+-	std::string const fn = "nonexistant.test.file";
++	std::string const fn = "nonexistent.test.file";
+ 	std::string const text1 = "Hello world.";
+ 	std::string const text2 = "new text";
+ 



View it on GitLab: https://salsa.debian.org/med-team/libmaus2/-/commit/be6f8364c812e75c44c9134e2cddf2d92690344f

-- 
View it on GitLab: https://salsa.debian.org/med-team/libmaus2/-/commit/be6f8364c812e75c44c9134e2cddf2d92690344f
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