Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
46edcc74 by Andreas Tille at 2020-11-21T13:45:16+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,163 +1,153 @@
-Last-Update: Sat, 21 Nov 2020 01:42:04 +0000
+Last-Update: Sat, 21 Nov 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 181 | {imaging,covid-19} |
- orthanc | 95 | {covid-19,imaging,practice} |
- orthanc-wsi | 50 | {oncology,practice,his,laboratory,covid-19,imaging} |
- gdcm | 33 | {imaging-dev} |
- dicomscope | 25 | {imaging} |
- dcm2niix | 23 | {imaging} |
+ dcmtk | 179 | {imaging,covid-19} |
+ orthanc | 93 | {covid-19,imaging,practice} |
+ orthanc-wsi | 48 | {oncology,practice,his,laboratory,covid-19,imaging} |
+ gdcm | 32 | {imaging-dev} |
+ htsjdk | 27 | {bio-dev} |
+ dicomscope | 24 | {imaging} |
dicom3tools | 23 | {imaging} |
- htsjdk | 23 | {bio-dev} |
- gdcm | 20 | {imaging,covid-19} |
- gnumed-server | 18 | {covid-19,practice} |
- gdcm | 17 | {imaging-dev} |
- invesalius | 15 | {imaging} |
- minc-tools | 13 | {imaging} |
+ dcm2niix | 22 | {imaging} |
+ gdcm | 19 | {imaging,covid-19} |
+ gnumed-server | 17 | {covid-19,practice} |
+ gdcm | 16 | {imaging-dev} |
+ invesalius | 13 | {imaging} |
ngs-sdk | 13 | {bio-dev} |
- openslide | 13 | {imaging} |
- adun.app | 12 | {bio} |
+ minc-tools | 12 | {imaging} |
+ ngs-sdk | 12 | {bio-dev} |
nifticlib | 12 | {imaging} |
- biosig | 11 | {imaging,physics} |
- king | 11 | {typesetting,imaging} |
+ openslide | 12 | {imaging} |
+ adun.app | 11 | {bio} |
+ nifticlib | 11 | {imaging-dev} |
pixelmed | 11 | {imaging} |
- plastimatch | 11 | {imaging} |
- vtk-dicom | 11 | {imaging} |
- nifticlib | 10 | {imaging-dev} |
+ biosig | 10 | {imaging,physics} |
+ king | 10 | {typesetting,imaging} |
+ plastimatch | 10 | {imaging} |
+ vtk-dicom | 10 | {imaging} |
+ insighttoolkit4 | 9 | {imaging-dev} |
ngs-sdk | 9 | {bio-dev} |
- insighttoolkit4 | 8 | {imaging-dev} |
- obitools | 8 | {bio} |
orthanc-webviewer | 8 | {imaging} |
- pymia | 8 | {imaging-dev} |
- ea-utils | 7 | {bio} |
- melting | 7 | {cloud,bio} |
- seqsero | 7 | {bio} |
- treeview | 7 | {bio-phylogeny,bio} |
+ obitools | 7 | {bio} |
+ pymia | 7 | {imaging-dev} |
dicompyler | 6 | {oncology} |
- librg-utils-perl | 6 | {bio} |
+ ea-utils | 6 | {bio} |
+ melting | 6 | {cloud,bio} |
multiqc | 6 | {bio,covid-19} |
+ seqsero | 6 | {bio} |
bart-view | 5 | {imaging} |
- biojava-live | 5 | {bio-dev} |
- biomaj3-cli | 5 | {cloud} |
elastix | 5 | {imaging} |
+ librg-utils-perl | 5 | {bio} |
libsbml | 5 | {bio-dev} |
orthanc-dicomweb | 5 | {imaging,covid-19} |
- phyutility | 5 | {cloud,bio} |
- rambo-k | 5 | {bio} |
- anfo | 4 | {bio,cloud} |
- arden | 4 | {bio,cloud} |
- assemblytics | 4 | {bio} |
- bamkit | 4 | {bio,covid-19} |
- beast-mcmc | 4 | {bio-phylogeny,bio} |
- biomaj3-daemon | 4 | {bio} |
- bio-tradis | 4 | {bio,bio-dev} |
- bitseq | 4 | {bio} |
- clonalframeml | 4 | {bio,covid-19} |
- clonalorigin | 4 | {bio} |
- embassy-domainatrix | 4 | {cloud,bio} |
- embassy-domalign | 4 | {cloud,bio} |
+ treeview | 5 | {bio-phylogeny,bio} |
+ biojava-live | 4 | {bio-dev} |
+ biomaj3-cli | 4 | {cloud} |
getdata | 4 | {bio} |
jebl2 | 4 | {bio-dev} |
- lagan | 4 | {bio} |
- lamarc | 4 | {bio} |
libminc | 4 | {imaging-dev} |
- libncl | 4 | {bio} |
- mipe | 4 | {cloud,bio} |
mrs | 4 | {bio} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
paraclu | 4 | {cloud,bio} |
- phast | 4 | {bio} |
- phybin | 4 | {bio} |
- predictprotein | 4 | {bio} |
- quorum | 4 | {bio} |
- saint | 4 | {bio} |
- salmon | 4 | {covid-19,bio} |
- sibsim4 | 4 | {cloud,bio} |
- stacks | 4 | {bio} |
+ phyutility | 4 | {cloud,bio} |
+ rambo-k | 4 | {bio} |
staden | 4 | {bio} |
- tracetuner | 4 | {bio} |
- atropos | 3 | {bio} |
- brig | 3 | {bio} |
- busco | 3 | {covid-19,bio} |
- canu | 3 | {bio} |
- dindel | 3 | {bio} |
- ecopcr | 3 | {bio} |
- embassy-domsearch | 3 | {cloud,bio} |
+ anfo | 3 | {bio,cloud} |
+ arden | 3 | {bio,cloud} |
+ assemblytics | 3 | {bio} |
+ bamkit | 3 | {bio,covid-19} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
+ biomaj3-daemon | 3 | {bio} |
+ bio-tradis | 3 | {bio,bio-dev} |
+ bitseq | 3 | {bio} |
+ clonalframeml | 3 | {bio,covid-19} |
+ clonalorigin | 3 | {bio} |
+ embassy-domainatrix | 3 | {cloud,bio} |
+ embassy-domalign | 3 | {cloud,bio} |
emboss-explorer | 3 | {bio} |
- estscan | 3 | {bio} |
fastlink | 3 | {cloud,bio} |
- fastml | 3 | {bio} |
ghmm | 3 | {bio} |
- hinge | 3 | {bio} |
- jellyfish1 | 3 | {bio} |
- jmodeltest | 3 | {bio,bio-phylogeny} |
+ lagan | 3 | {bio} |
+ lamarc | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
- librdp-taxonomy-tree-java | 3 | {bio-dev} |
- logol | 3 | {bio} |
- mauve-aligner | 3 | {bio} |
+ libncl | 3 | {bio} |
metaphlan2 | 3 | {bio} |
- mhap | 3 | {bio-ngs,bio} |
- microbegps | 3 | {bio} |
- ngs-sdk | 3 | {bio-dev} |
- perm | 3 | {bio,cloud} |
+ mipe | 3 | {cloud,bio} |
+ phast | 3 | {bio} |
+ phybin | 3 | {bio} |
piler | 3 | {bio} |
- placnet | 3 | {bio} |
- prime-phylo | 3 | {bio,cloud} |
- proalign | 3 | {bio-phylogeny,bio} |
- pscan-chip | 3 | {bio} |
- qcumber | 3 | {bio} |
- rdp-alignment | 3 | {bio} |
- rdp-classifier | 3 | {bio} |
- rtax | 3 | {bio,cloud} |
+ predictprotein | 3 | {bio} |
+ quorum | 3 | {bio} |
runcircos-gui | 3 | {bio} |
- samblaster | 3 | {covid-19,bio} |
- scrm | 3 | {bio} |
- sga | 3 | {bio} |
- soapaligner | 3 | {bio} |
- soapsnp | 3 | {bio} |
+ saint | 3 | {bio} |
+ salmon | 3 | {covid-19,bio} |
+ sibsim4 | 3 | {cloud,bio} |
spaced | 3 | {bio} |
- sprai | 3 | {bio} |
spread-phy | 3 | {bio-phylogeny,bio} |
- yaha | 3 | {bio} |
- zalign | 3 | {cloud,bio} |
- bbmap | 2 | {covid-19,bio} |
+ stacks | 3 | {bio} |
+ tracetuner | 3 | {bio} |
+ atropos | 2 | {bio} |
biosig | 2 | {imaging-dev,physics} |
- cat-bat | 2 | {covid-19,bio} |
+ brig | 2 | {bio} |
+ busco | 2 | {covid-19,bio} |
+ canu | 2 | {bio} |
ctn | 2 | {imaging-dev} |
- delly | 2 | {covid-19,bio} |
- emmax | 2 | {bio} |
+ dindel | 2 | {bio} |
+ ecopcr | 2 | {bio} |
+ embassy-domsearch | 2 | {cloud,bio} |
+ estscan | 2 | {bio} |
+ fastml | 2 | {bio} |
fsm-lite | 2 | {bio} |
- gatb-core | 2 | {bio} |
+ hinge | 2 | {bio} |
ipig | 2 | {bio} |
+ jellyfish1 | 2 | {bio} |
+ jmodeltest | 2 | {bio,bio-phylogeny} |
libmuscle | 2 | {bio-dev} |
libpal-java | 2 | {bio-dev} |
- nanosv | 2 | {covid-19,bio} |
+ librdp-taxonomy-tree-java | 2 | {bio-dev} |
+ logol | 2 | {bio} |
+ mauve-aligner | 2 | {bio} |
+ mhap | 2 | {bio-ngs,bio} |
+ microbegps | 2 | {bio} |
opencfu | 2 | {laboratory} |
openslide | 2 | {imaging-dev} |
papyrus | 2 | {imaging-dev} |
pbdagcon | 2 | {bio} |
- plasmidseeker | 2 | {bio} |
+ perm | 2 | {bio,cloud} |
+ placnet | 2 | {bio} |
+ prime-phylo | 2 | {bio,cloud} |
+ proalign | 2 | {bio-phylogeny,bio} |
prottest | 2 | {bio,bio-phylogeny} |
- segemehl | 2 | {bio} |
+ pscan-chip | 2 | {bio} |
+ qcumber | 2 | {bio} |
+ rdp-alignment | 2 | {bio} |
+ rdp-classifier | 2 | {bio} |
+ rtax | 2 | {bio,cloud} |
+ samblaster | 2 | {covid-19,bio} |
+ scrm | 2 | {bio} |
+ sga | 2 | {bio} |
sight | 2 | {imaging} |
+ soapaligner | 2 | {bio} |
+ soapsnp | 2 | {bio} |
+ sprai | 2 | {bio} |
srf | 2 | {bio-dev} |
suitename | 2 | {bio} |
surankco | 2 | {bio} |
- thesias | 2 | {covid-19,bio} |
- trace2dbest | 2 | {bio} |
- yanagiba | 2 | {covid-19,bio} |
+ yaha | 2 | {bio} |
+ zalign | 2 | {cloud,bio} |
bambamc | 1 | {bio-dev} |
+ bbmap | 1 | {covid-19,bio} |
biosig | 1 | {physics,imaging-dev} |
blasr | 1 | {bio-ngs,bio} |
blimps | 1 | {bio} |
- bustools | 1 | {bio,covid-19} |
- cufflinks | 1 | {bio,cloud} |
- dextractor | 1 | {covid-19,bio} |
+ cat-bat | 1 | {covid-19,bio} |
+ delly | 1 | {covid-19,bio} |
+ emmax | 1 | {bio} |
+ gatb-core | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
htscodecs | 1 | {bio-dev,covid-19} |
- kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libbpp-core | 1 | {bio-dev} |
libbpp-phyl | 1 | {bio-dev} |
@@ -177,31 +167,34 @@ Last-Update: Sat, 21 Nov 2020 01:42:04 +0000
libqes | 1 | {bio-dev} |
libseqlib | 1 | {bio-dev} |
libstatgen | 1 | {bio-dev} |
+ nanosv | 1 | {covid-19,bio} |
ncbi-vdb | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
oscar | 1 | {tools,data,practice} |
pbseqlib | 1 | {bio-dev} |
- pilercr | 1 | {bio} |
- pplacer | 1 | {bio,bio-phylogeny,covid-19} |
+ plasmidseeker | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
+ segemehl | 1 | {bio} |
seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
simrisc | 1 | {oncology} |
- skesa | 1 | {bio} |
- skewer | 1 | {bio} |
- spaln | 1 | {covid-19,bio} |
- tophat-recondition | 1 | {bio,covid-19} |
+ thesias | 1 | {covid-19,bio} |
+ trace2dbest | 1 | {bio} |
tvc | 1 | {bio} |
- varscan | 1 | {bio,covid-19} |
vienna-rna | 1 | {bio,covid-19} |
+ yanagiba | 1 | {covid-19,bio} |
acedb | 0 | {cloud,bio} |
biojava4-live | 0 | {bio-dev} |
biosig | 0 | {physics} |
biosyntax | 0 | {bio} |
+ bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
+ cufflinks | 0 | {bio,cloud} |
+ dextractor | 0 | {covid-19,bio} |
fis-gtm | 0 | {his} |
intake | 0 | {bio-dev,bio} |
+ kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
@@ -222,10 +215,12 @@ Last-Update: Sat, 21 Nov 2020 01:42:04 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pigx-rnaseq | 0 | {covid-19,bio} |
+ pilercr | 0 | {bio} |
pique | 0 | {bio} |
plasmidid | 0 | {bio,covid-19} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
+ pplacer | 0 | {bio,bio-phylogeny,covid-19} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
q2templates | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
@@ -233,8 +228,13 @@ Last-Update: Sat, 21 Nov 2020 01:42:04 +0000
shovill | 0 | {covid-19,bio} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
+ skesa | 0 | {bio} |
+ skewer | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
+ spaln | 0 | {covid-19,bio} |
+ tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
+ varscan | 0 | {bio,covid-19} |
vtk-dicom | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/46edcc74dfb7267245844f53c6cb05e4ee6cc018
--
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