[med-svn] [Git][med-team/diamond-aligner][master] 5 commits: routine-update: New upstream version

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / diamond-aligner


Commits:
1088d07a by Michael R. Crusoe at 2020-11-21T19:54:20+01:00
routine-update: New upstream version

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6e1f144e by Michael R. Crusoe at 2020-11-21T19:54:21+01:00
New upstream version 2.0.5
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f86a58c3 by Michael R. Crusoe at 2020-11-21T19:54:23+01:00
Update upstream source from tag 'upstream/2.0.5'

Update to upstream version '2.0.5'
with Debian dir 24ce2ccf56c8d7660f71c30c589102e8ad347874
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2f22924e by Michael R. Crusoe at 2020-11-21T19:56:19+01:00
Spelling patch removed, it was merged upstream.

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523a7e09 by Michael R. Crusoe at 2020-11-21T19:56:55+01:00
routine-update: Ready to upload to unstable

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30 changed files:

- CMakeLists.txt
- debian/changelog
- − debian/patches/series
- − debian/patches/spelling
- + docs/1 Tutorial.MD
- + docs/2 Installation.MD
- + docs/3 Command line options.MD
- + docs/4 Support.MD
- + docs/5 Advanced topics.MD
- + docs/6 Distributed computing.MD
- + docs/Documentation.MD
- src/ChangeLog
- src/align/align.cpp
- src/align/align.h
- src/align/extend.cpp
- src/align/extend.h
- src/align/gapped.cpp
- src/align/gapped_filter.cpp
- + src/align/global_ranking/extend.cpp
- + src/align/global_ranking/global_ranking.cpp
- + src/align/global_ranking/global_ranking.h
- src/align/legacy/banded_swipe_pipeline.cpp
- src/align/legacy/query_mapper.cpp
- src/align/legacy/query_mapper.h
- + src/align/load_hits.cpp
- src/align/output.cpp
- src/align/ranking.cpp
- src/align/target.h
- src/align/ungapped.cpp
- src/basic/basic.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/-/compare/bd36664ee79c220c082bfdbe53588af0dae64456...523a7e098469e5fba62b82a2d9cb3c188a7885e3

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View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/-/compare/bd36664ee79c220c082bfdbe53588af0dae64456...523a7e098469e5fba62b82a2d9cb3c188a7885e3
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