[med-svn] [Git][med-team/theseus][master] 12 commits: routine-update: Standards-Version: 4.5.1
Andreas Tille
gitlab at salsa.debian.org
Tue Nov 24 14:58:07 GMT 2020
Andreas Tille pushed to branch master at Debian Med / theseus
Commits:
924b7b59 by Andreas Tille at 2020-11-24T15:48:37+01:00
routine-update: Standards-Version: 4.5.1
- - - - -
e37b10dc by Andreas Tille at 2020-11-24T15:48:38+01:00
routine-update: debhelper-compat 13
- - - - -
b68a2a70 by Andreas Tille at 2020-11-24T15:48:42+01:00
routine-update: Secure URI in copyright format
- - - - -
d0cee9c7 by Andreas Tille at 2020-11-24T15:48:42+01:00
routine-update: Remove trailing whitespace in debian/changelog
- - - - -
f67fbc7e by Andreas Tille at 2020-11-24T15:48:42+01:00
routine-update: Remove trailing whitespace in debian/copyright
- - - - -
cf9e414f by Andreas Tille at 2020-11-24T15:48:42+01:00
routine-update: autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g
- - - - -
055fc217 by Andreas Tille at 2020-11-24T15:48:42+01:00
routine-update: Add salsa-ci file
- - - - -
78506ab0 by Andreas Tille at 2020-11-24T15:48:43+01:00
routine-update: Rules-Requires-Root: no
- - - - -
797f82ae by Andreas Tille at 2020-11-24T15:48:46+01:00
Update watch file format version to 4.
Changes-By: lintian-brush
Fixes: lintian: older-debian-watch-file-standard
See-also: https://lintian.debian.org/tags/older-debian-watch-file-standard.html
- - - - -
4011bc19 by Andreas Tille at 2020-11-24T15:49:13+01:00
Refer to specific version of license GPL-3+.
Changes-By: lintian-brush
Fixes: lintian: copyright-refers-to-symlink-license
See-also: https://lintian.debian.org/tags/copyright-refers-to-symlink-license.html
Fixes: lintian: copyright-refers-to-versionless-license-file
See-also: https://lintian.debian.org/tags/copyright-refers-to-versionless-license-file.html
- - - - -
b7818acd by Andreas Tille at 2020-11-24T15:49:13+01:00
Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright).
Changes-By: lintian-brush
- - - - -
bf03fd80 by Andreas Tille at 2020-11-24T15:52:51+01:00
routine-update: Ready to upload to unstable
- - - - -
8 changed files:
- debian/changelog
- − debian/compat
- debian/control
- debian/copyright
- + debian/salsa-ci.yml
- debian/tests/run-unit-test
- debian/upstream/metadata
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,20 @@
+theseus (3.3.0-9) unstable; urgency=medium
+
+ * Standards-Version: 4.5.1 (routine-update)
+ * debhelper-compat 13 (routine-update)
+ * Secure URI in copyright format (routine-update)
+ * Remove trailing whitespace in debian/changelog (routine-update)
+ * Remove trailing whitespace in debian/copyright (routine-update)
+ * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update)
+ * Add salsa-ci file (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ * Update watch file format version to 4.
+ * Refer to specific version of license GPL-3+.
+ * Remove obsolete field Name from debian/upstream/metadata (already present in
+ machine-readable debian/copyright).
+
+ -- Andreas Tille <tille at debian.org> Tue, 24 Nov 2020 15:49:14 +0100
+
theseus (3.3.0-8) unstable; urgency=medium
* Fix string buffer size
@@ -245,7 +262,7 @@ theseus (1.1.5-0ubuntu2) hardy; urgency=low
* debian/rules: FTBFS on all archs but i386, due to missing
binary-arch target (LP: #181359)
* Removed redundant libraries.
-
+
-- Morten Kjeldgaard <mok at bioxray.dk> Tue, 08 Jan 2008 22:35:42 +0100
theseus (1.1.5-0ubuntu1) hardy; urgency=low
=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11
=====================================
debian/control
=====================================
@@ -3,12 +3,13 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
Uploaders: Andreas Tille <tille at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 13),
libgsl-dev
-Standards-Version: 4.2.1
+Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/theseus
Vcs-Git: https://salsa.debian.org/med-team/theseus.git
Homepage: http://www.theseus3d.org
+Rules-Requires-Root: no
Package: theseus
Architecture: any
@@ -40,8 +41,6 @@ Package: theseus-examples
Architecture: all
Depends: ${misc:Depends}
Enhances: theseus
-Breaks: theseus (<= 3.0.0-1)
-Replaces: theseus (<= 3.0.0-1)
Description: superimpose macromolecules using maximum likelihood (examples)
Theseus is a program that simultaneously superimposes multiple
macromolecular structures. Theseus finds the optimal solution to the
=====================================
debian/copyright
=====================================
@@ -1,4 +1,4 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: Theseus
Upstream-Contact: Douglas Theobald <dtheobald at brandeis.edu>
Source: http://www.theseus3d.org/index.html
@@ -84,9 +84,9 @@ License: PD
fitness for a particular purpose. The institutions managing this site make
no representation that these resources will not infringe any patent or other
proprietary right.
-Comment: The files in examples/ are in the public domain, and can be copied
+Comment: The files in examples/ are in the public domain, and can be copied
and distributed with no restriction. It is scientific data from the Protein
- Data Bank (http://www.pdb.org) and the database ASTRAL
+ Data Bank (http://www.pdb.org) and the database ASTRAL
(http://astral.berkeley.edu).
Files: debian/*
@@ -127,5 +127,4 @@ License: GPL-3+
along with this program. If not, see <http://www.gnu.org/licenses/>.
.
On a Debian system, the GNU GPL license is distributed in the file
- ‘/usr/share/common-licenses/GPL’.
-
+ ‘/usr/share/common-licenses/GPL-3’.
=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
=====================================
debian/tests/run-unit-test
=====================================
@@ -2,11 +2,11 @@
pkg=theseus
-if [ "$ADTTMP" = "" ] ; then
- ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+if [ "$AUTOPKGTEST_TMP" = "" ] ; then
+ AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
fi
-cd $ADTTMP
-cp -a /usr/share/doc/theseus/examples/* $ADTTMP
+cd $AUTOPKGTEST_TMP
+cp -a /usr/share/doc/theseus/examples/* $AUTOPKGTEST_TMP
find . -name "*.gz" -exec gunzip \{\} \;
theseus 1s40.pdb
=====================================
debian/upstream/metadata
=====================================
@@ -1,4 +1,3 @@
-Name: Theseus
Reference:
- Author: Theobald, Douglas L. and Wuttke, Deborah S.
Title: >
=====================================
debian/watch
=====================================
@@ -1,3 +1,2 @@
-version=3
+version=4
http://www.theseus3d.org/index.html /src/theseus_(.*).tar.gz
-
View it on GitLab: https://salsa.debian.org/med-team/theseus/-/compare/64165421de225da4e31d7cff786ba32adf73a0af...bf03fd800a3c601fea532c5b1cf8377f20a21f4f
--
View it on GitLab: https://salsa.debian.org/med-team/theseus/-/compare/64165421de225da4e31d7cff786ba32adf73a0af...bf03fd800a3c601fea532c5b1cf8377f20a21f4f
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