Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
940a11b7 by Andreas Tille at 2020-11-25T13:45:31+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,36 +1,38 @@
-Last-Update: Wed, 25 Nov 2020 01:42:03 +0000
+Last-Update: Wed, 25 Nov 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 179 | {imaging,covid-19} |
- orthanc | 96 | {covid-19,imaging,practice} |
+ dcmtk | 176 | {imaging,covid-19} |
+ orthanc | 95 | {covid-19,imaging,practice} |
orthanc-wsi | 49 | {oncology,practice,his,laboratory,covid-19,imaging} |
- gdcm | 35 | {imaging-dev} |
- htsjdk | 28 | {bio-dev} |
- dicomscope | 22 | {imaging} |
- dcm2niix | 21 | {imaging} |
+ gdcm | 37 | {imaging-dev} |
+ htsjdk | 27 | {bio-dev} |
+ dicomscope | 23 | {imaging} |
+ dcm2niix | 22 | {imaging} |
dicom3tools | 21 | {imaging} |
gdcm | 19 | {imaging,covid-19} |
gnumed-server | 19 | {covid-19,practice} |
- gdcm | 14 | {imaging-dev} |
+ gdcm | 15 | {imaging-dev} |
ngs-sdk | 13 | {bio-dev} |
- nifticlib | 13 | {imaging-dev} |
invesalius | 12 | {imaging} |
minc-tools | 12 | {imaging} |
ngs-sdk | 12 | {bio-dev} |
nifticlib | 12 | {imaging} |
+ nifticlib | 12 | {imaging-dev} |
adun.app | 11 | {bio} |
- openslide | 11 | {imaging} |
+ openslide | 10 | {imaging} |
pixelmed | 10 | {imaging} |
plastimatch | 10 | {imaging} |
vtk-dicom | 10 | {imaging} |
- biosig | 9 | {imaging,physics} |
- insighttoolkit4 | 9 | {imaging-dev} |
king | 9 | {typesetting,imaging} |
- ngs-sdk | 9 | {bio-dev} |
+ biosig | 8 | {imaging,physics} |
+ insighttoolkit4 | 8 | {imaging-dev} |
+ ngs-sdk | 8 | {bio-dev} |
orthanc-webviewer | 8 | {imaging} |
+ librg-utils-perl | 7 | {bio} |
obitools | 7 | {bio} |
pymia | 7 | {imaging-dev} |
+ biojava-live | 6 | {bio-dev} |
dicompyler | 6 | {oncology} |
ea-utils | 6 | {bio} |
melting | 6 | {cloud,bio} |
@@ -38,22 +40,21 @@ Last-Update: Wed, 25 Nov 2020 01:42:03 +0000
seqsero | 6 | {bio} |
treeview | 6 | {bio-phylogeny,bio} |
bart-view | 5 | {imaging} |
- biojava-live | 5 | {bio-dev} |
elastix | 5 | {imaging} |
getdata | 5 | {bio} |
jebl2 | 5 | {bio-dev} |
- libminc | 5 | {imaging-dev} |
- librg-utils-perl | 5 | {bio} |
libsbml | 5 | {bio-dev} |
mrs | 5 | {bio} |
orthanc-dicomweb | 5 | {imaging,covid-19} |
biomaj3-cli | 4 | {cloud} |
+ bio-tradis | 4 | {bio,bio-dev} |
emboss-explorer | 4 | {bio} |
+ libdivsufsort | 4 | {bio-dev} |
+ libminc | 4 | {imaging-dev} |
mipe | 4 | {cloud,bio} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
paraclu | 4 | {cloud,bio} |
- phyutility | 4 | {cloud,bio} |
rambo-k | 4 | {bio} |
spread-phy | 4 | {bio-phylogeny,bio} |
staden | 4 | {bio} |
@@ -64,7 +65,6 @@ Last-Update: Wed, 25 Nov 2020 01:42:03 +0000
bamkit | 3 | {bio,covid-19} |
beast-mcmc | 3 | {bio-phylogeny,bio} |
biomaj3-daemon | 3 | {bio} |
- bio-tradis | 3 | {bio,bio-dev} |
bitseq | 3 | {bio} |
clonalframeml | 3 | {bio,covid-19} |
clonalorigin | 3 | {bio} |
@@ -74,14 +74,16 @@ Last-Update: Wed, 25 Nov 2020 01:42:03 +0000
ghmm | 3 | {bio} |
lagan | 3 | {bio} |
lamarc | 3 | {bio} |
- libdivsufsort | 3 | {bio-dev} |
libncl | 3 | {bio} |
+ libpal-java | 3 | {bio-dev} |
logol | 3 | {bio} |
metaphlan2 | 3 | {bio} |
phast | 3 | {bio} |
phybin | 3 | {bio} |
+ phyutility | 3 | {cloud,bio} |
piler | 3 | {bio} |
predictprotein | 3 | {bio} |
+ prottest | 3 | {bio,bio-phylogeny} |
quorum | 3 | {bio} |
runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
@@ -104,21 +106,19 @@ Last-Update: Wed, 25 Nov 2020 01:42:03 +0000
ipig | 2 | {bio} |
jellyfish1 | 2 | {bio} |
jmodeltest | 2 | {bio,bio-phylogeny} |
+ libbio-mage-utils-perl | 2 | {bio-dev} |
libmuscle | 2 | {bio-dev} |
- libpal-java | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
mauve-aligner | 2 | {bio} |
mhap | 2 | {bio-ngs,bio} |
microbegps | 2 | {bio} |
opencfu | 2 | {laboratory} |
- openslide | 2 | {imaging-dev} |
papyrus | 2 | {imaging-dev} |
pbdagcon | 2 | {bio} |
perm | 2 | {bio,cloud} |
placnet | 2 | {bio} |
prime-phylo | 2 | {bio,cloud} |
proalign | 2 | {bio-phylogeny,bio} |
- prottest | 2 | {bio,bio-phylogeny} |
pscan-chip | 2 | {bio} |
qcumber | 2 | {bio} |
rdp-alignment | 2 | {bio} |
@@ -147,7 +147,7 @@ Last-Update: Wed, 25 Nov 2020 01:42:03 +0000
gatb-core | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
htscodecs | 1 | {bio-dev,covid-19} |
- libbio-mage-utils-perl | 1 | {bio-dev} |
+ intake | 1 | {bio-dev,bio} |
libbpp-core | 1 | {bio-dev} |
libbpp-phyl | 1 | {bio-dev} |
libbpp-phyl-omics | 1 | {bio-dev} |
@@ -168,6 +168,7 @@ Last-Update: Wed, 25 Nov 2020 01:42:03 +0000
libstatgen | 1 | {bio-dev} |
nanosv | 1 | {covid-19,bio} |
ncbi-vdb | 1 | {bio-dev} |
+ openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
oscar | 1 | {tools,data,practice} |
pbseqlib | 1 | {bio-dev} |
@@ -194,7 +195,6 @@ Last-Update: Wed, 25 Nov 2020 01:42:03 +0000
cufflinks | 0 | {bio,cloud} |
dextractor | 0 | {covid-19,bio} |
fis-gtm | 0 | {his} |
- intake | 0 | {bio-dev,bio} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -220,13 +220,12 @@ Last-Update: Wed, 25 Nov 2020 01:42:03 +0000
pique | 0 | {bio} |
plasmidid | 0 | {bio,covid-19} |
pplacer | 0 | {bio,bio-phylogeny,covid-19} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
+ python-seqcluster | 0 | {bio} |
q2templates | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
shovill | 0 | {covid-19,bio} |
- sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
@@ -238,6 +237,7 @@ Last-Update: Wed, 25 Nov 2020 01:42:03 +0000
vtk-dicom | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
+ sight | -1 | {imaging-dev} |
svim | -1 | {bio} |
(267 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/940a11b731e4ede4416c055b54e51b146eefb080
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/940a11b731e4ede4416c055b54e51b146eefb080
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