Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
0b169d3e by Andreas Tille at 2020-11-27T13:46:01+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,76 +1,76 @@
-Last-Update: Fri, 27 Nov 2020 01:42:04 +0000
+Last-Update: Fri, 27 Nov 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 172 | {imaging,covid-19} |
- orthanc | 93 | {covid-19,imaging,practice} |
- orthanc-wsi | 47 | {oncology,practice,his,laboratory,covid-19,imaging} |
- gdcm | 37 | {imaging-dev} |
- htsjdk | 27 | {bio-dev} |
- dcm2niix | 23 | {imaging} |
- dicomscope | 22 | {imaging} |
- dicom3tools | 20 | {imaging} |
- gdcm | 20 | {imaging,covid-19} |
- gnumed-server | 18 | {covid-19,practice} |
- gdcm | 14 | {imaging-dev} |
+ dcmtk | 175 | {imaging,covid-19} |
+ orthanc | 94 | {covid-19,imaging,practice} |
+ orthanc-wsi | 47 | {oncology,practice,covid-19,his,imaging,laboratory} |
+ gdcm | 38 | {imaging-dev} |
+ htsjdk | 29 | {bio-dev} |
+ dcm2niix | 21 | {imaging} |
+ dicomscope | 20 | {imaging} |
+ gdcm | 19 | {covid-19,imaging} |
+ dicom3tools | 18 | {imaging} |
+ gnumed-server | 18 | {practice,covid-19} |
+ ngs-sdk | 16 | {bio-dev} |
+ gdcm | 13 | {imaging-dev} |
invesalius | 12 | {imaging} |
- ngs-sdk | 12 | {bio-dev} |
- nifticlib | 12 | {imaging} |
adun.app | 11 | {bio} |
- minc-tools | 11 | {imaging} |
ngs-sdk | 11 | {bio-dev} |
nifticlib | 11 | {imaging-dev} |
- openslide | 10 | {imaging} |
- pixelmed | 10 | {imaging} |
- plastimatch | 10 | {imaging} |
- vtk-dicom | 10 | {imaging} |
- biosig | 8 | {imaging,physics} |
- king | 8 | {typesetting,imaging} |
+ nifticlib | 11 | {imaging} |
+ minc-tools | 10 | {imaging} |
+ ngs-sdk | 9 | {bio-dev} |
+ openslide | 9 | {imaging} |
+ pixelmed | 9 | {imaging} |
+ plastimatch | 9 | {imaging} |
+ vtk-dicom | 9 | {imaging} |
orthanc-webviewer | 8 | {imaging} |
+ biosig | 7 | {imaging,physics} |
insighttoolkit4 | 7 | {imaging-dev} |
+ king | 7 | {imaging,typesetting} |
librg-utils-perl | 7 | {bio} |
- ngs-sdk | 7 | {bio-dev} |
- obitools | 7 | {bio} |
- pymia | 7 | {imaging-dev} |
+ multiqc | 7 | {covid-19,bio} |
biojava-live | 6 | {bio-dev} |
ea-utils | 6 | {bio} |
+ jebl2 | 6 | {bio-dev} |
melting | 6 | {cloud,bio} |
- multiqc | 6 | {bio,covid-19} |
+ obitools | 6 | {bio} |
+ pymia | 6 | {imaging-dev} |
seqsero | 6 | {bio} |
treeview | 6 | {bio-phylogeny,bio} |
bart-view | 5 | {imaging} |
dicompyler | 5 | {oncology} |
elastix | 5 | {imaging} |
getdata | 5 | {bio} |
- jebl2 | 5 | {bio-dev} |
libsbml | 5 | {bio-dev} |
mrs | 5 | {bio} |
- orthanc-dicomweb | 5 | {imaging,covid-19} |
+ orthanc-dicomweb | 5 | {covid-19,imaging} |
+ bamkit | 4 | {bio,covid-19} |
biomaj3-cli | 4 | {cloud} |
bio-tradis | 4 | {bio,bio-dev} |
emboss-explorer | 4 | {bio} |
+ fastlink | 4 | {cloud,bio} |
libdivsufsort | 4 | {bio-dev} |
libminc | 4 | {imaging-dev} |
- mipe | 4 | {cloud,bio} |
+ mipe | 4 | {bio,cloud} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
paraclu | 4 | {cloud,bio} |
rambo-k | 4 | {bio} |
- spread-phy | 4 | {bio-phylogeny,bio} |
+ spread-phy | 4 | {bio,bio-phylogeny} |
staden | 4 | {bio} |
tracetuner | 4 | {bio} |
anfo | 3 | {bio,cloud} |
- arden | 3 | {bio,cloud} |
+ arden | 3 | {cloud,bio} |
assemblytics | 3 | {bio} |
- bamkit | 3 | {bio,covid-19} |
- beast-mcmc | 3 | {bio-phylogeny,bio} |
+ beast-mcmc | 3 | {bio,bio-phylogeny} |
biomaj3-daemon | 3 | {bio} |
bitseq | 3 | {bio} |
clonalframeml | 3 | {bio,covid-19} |
clonalorigin | 3 | {bio} |
embassy-domainatrix | 3 | {cloud,bio} |
- embassy-domalign | 3 | {cloud,bio} |
- fastlink | 3 | {cloud,bio} |
+ embassy-domalign | 3 | {bio,cloud} |
ghmm | 3 | {bio} |
lagan | 3 | {bio} |
lamarc | 3 | {bio} |
@@ -80,32 +80,31 @@ Last-Update: Fri, 27 Nov 2020 01:42:04 +0000
metaphlan2 | 3 | {bio} |
phast | 3 | {bio} |
phybin | 3 | {bio} |
- phyutility | 3 | {cloud,bio} |
+ phyutility | 3 | {bio,cloud} |
piler | 3 | {bio} |
predictprotein | 3 | {bio} |
prottest | 3 | {bio,bio-phylogeny} |
quorum | 3 | {bio} |
runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
- salmon | 3 | {covid-19,bio} |
+ salmon | 3 | {bio,covid-19} |
sibsim4 | 3 | {cloud,bio} |
spaced | 3 | {bio} |
stacks | 3 | {bio} |
- atropos | 2 | {bio} |
biosig | 2 | {imaging-dev,physics} |
brig | 2 | {bio} |
busco | 2 | {covid-19,bio} |
canu | 2 | {bio} |
dindel | 2 | {bio} |
ecopcr | 2 | {bio} |
- embassy-domsearch | 2 | {cloud,bio} |
+ embassy-domsearch | 2 | {bio,cloud} |
estscan | 2 | {bio} |
fastml | 2 | {bio} |
fsm-lite | 2 | {bio} |
hinge | 2 | {bio} |
ipig | 2 | {bio} |
jellyfish1 | 2 | {bio} |
- jmodeltest | 2 | {bio,bio-phylogeny} |
+ jmodeltest | 2 | {bio-phylogeny,bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libmuscle | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
@@ -123,8 +122,8 @@ Last-Update: Fri, 27 Nov 2020 01:42:04 +0000
qcumber | 2 | {bio} |
rdp-alignment | 2 | {bio} |
rdp-classifier | 2 | {bio} |
- rtax | 2 | {bio,cloud} |
- samblaster | 2 | {covid-19,bio} |
+ rtax | 2 | {cloud,bio} |
+ samblaster | 2 | {bio,covid-19} |
scrm | 2 | {bio} |
sga | 2 | {bio} |
sight | 2 | {imaging} |
@@ -135,18 +134,19 @@ Last-Update: Fri, 27 Nov 2020 01:42:04 +0000
surankco | 2 | {bio} |
yaha | 2 | {bio} |
zalign | 2 | {cloud,bio} |
+ atropos | 1 | {bio} |
bambamc | 1 | {bio-dev} |
- bbmap | 1 | {covid-19,bio} |
- biosig | 1 | {physics,imaging-dev} |
- blasr | 1 | {bio-ngs,bio} |
+ bbmap | 1 | {bio,covid-19} |
+ biosig | 1 | {imaging-dev,physics} |
+ blasr | 1 | {bio,bio-ngs} |
blimps | 1 | {bio} |
- cat-bat | 1 | {covid-19,bio} |
+ cat-bat | 1 | {bio,covid-19} |
ctn | 1 | {imaging-dev} |
delly | 1 | {covid-19,bio} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
gatb-core | 1 | {bio} |
- htscodecs | 1 | {bio-dev,covid-19} |
+ htscodecs | 1 | {covid-19,bio-dev} |
intake | 1 | {bio-dev,bio} |
libbpp-core | 1 | {bio-dev} |
libbpp-phyl | 1 | {bio-dev} |
@@ -166,13 +166,13 @@ Last-Update: Fri, 27 Nov 2020 01:42:04 +0000
libqes | 1 | {bio-dev} |
libseqlib | 1 | {bio-dev} |
libstatgen | 1 | {bio-dev} |
- nanosv | 1 | {covid-19,bio} |
+ nanosv | 1 | {bio,covid-19} |
ncbi-vdb | 1 | {bio-dev} |
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
- oscar | 1 | {tools,data,practice} |
+ oscar | 1 | {tools,practice,data} |
pbseqlib | 1 | {bio-dev} |
- plasmidid | 1 | {bio,covid-19} |
+ plasmidid | 1 | {covid-19,bio} |
plasmidseeker | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
segemehl | 1 | {bio} |
@@ -182,7 +182,7 @@ Last-Update: Fri, 27 Nov 2020 01:42:04 +0000
simpleitk | 1 | {imaging-dev} |
simrisc | 1 | {oncology} |
srf | 1 | {bio-dev} |
- thesias | 1 | {covid-19,bio} |
+ thesias | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
tvc | 1 | {bio} |
vienna-rna | 1 | {bio,covid-19} |
@@ -216,12 +216,12 @@ Last-Update: Fri, 27 Nov 2020 01:42:04 +0000
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- pigx-rnaseq | 0 | {covid-19,bio} |
+ pigx-rnaseq | 0 | {bio,covid-19} |
pilercr | 0 | {bio} |
pique | 0 | {bio} |
- pplacer | 0 | {bio,bio-phylogeny,covid-19} |
- python-seqcluster | 0 | {bio} |
+ pplacer | 0 | {bio-phylogeny,covid-19,bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
+ python-seqcluster | 0 | {bio} |
q2templates | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
@@ -229,11 +229,11 @@ Last-Update: Fri, 27 Nov 2020 01:42:04 +0000
simpleitk | 0 | {imaging-dev} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {bio,covid-19} |
- spaln | 0 | {covid-19,bio} |
+ smrtanalysis | 0 | {covid-19,bio} |
+ spaln | 0 | {bio,covid-19} |
tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
- varscan | 0 | {bio,covid-19} |
+ varscan | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/0b169d3e85eef8b5ba675cb910af895b79273b6d
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/0b169d3e85eef8b5ba675cb910af895b79273b6d
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