[med-svn] [Git][med-team/pftools][master] Add missing config.h.cmake

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / pftools


Commits:
c9fa28f0 by Andreas Tille at 2020-11-27T18:27:37+01:00
Add missing config.h.cmake

- - - - -


3 changed files:

- + debian/missing-sources/config.h.cmake
- + debian/missing-sources/get
- debian/rules


Changes:

=====================================
debian/missing-sources/config.h.cmake
=====================================
@@ -0,0 +1,146 @@
+#ifndef _CONFIG_H
+#define _CONFIG_H
+/*
+ ********************************************************************************
+ * SPECIFIC ARCHITECTURE
+ ********************************************************************************
+ */
+#cmakedefine USE_WINAPI
+#ifdef USE_WINAPI
+#define __USE_WINAPI__
+#endif
+
+#cmakedefine USE_AFFINITY
+#if defined(USE_AFFINITY)
+# if defined(__GNUC__) && !defined(USE_WINAPI)
+#  define _GNU_SOURCE
+# endif
+#endif
+
+/*
+ ********************************************************************************
+ * Math Library
+ ********************************************************************************
+ */
+#ifdef __INTEL_COMPILER
+# include <mathimf.h>
+#elif __IBMC__
+# include <math.h>
+# include <mass.h>
+#else
+# include <math.h>
+#endif
+
+/*
+ ********************************************************************************
+ * ALLOCA header file
+ ********************************************************************************
+ */
+#cmakedefine HAVE_ALLOCA_H
+#if !defined(HAVE_ALLOCA_H) && defined(__GNUC__)
+/* This is not defined in MinGW */
+#define alloca __builtin_alloca
+#endif
+
+/*
+ ********************************************************************************
+ * MM_MALLOC header file
+ ********************************************************************************
+ */
+#cmakedefine HAVE_MM_MALLOC_H 1
+#ifdef HAVE_MM_MALLOC_H
+# include <mm_malloc.h>
+#else
+#include <stdlib.h>
+/* We can't depend on <stdlib.h> since the prototype of posix_memalign
+   may not be visible.  */
+#ifndef __cplusplus
+extern int posix_memalign (void **, size_t, size_t);
+#else
+extern "C" int posix_memalign (void **, size_t, size_t) throw ();
+#endif
+
+static inline void * __ALWAYS_INLINE
+_mm_malloc (size_t size, size_t alignment)
+{
+  void *ptr;
+  if (alignment == 1)
+    return malloc (size);
+  if (alignment == 2 || (sizeof (void *) == 8 && alignment == 4))
+    alignment = sizeof (void *);
+  if (posix_memalign (&ptr, alignment, size) == 0)
+    return ptr;
+  else
+    return NULL;
+}
+
+static inline void __ALWAYS_INLINE
+_mm_free (void * ptr)
+{
+  free (ptr);
+}
+#endif
+
+/*
+ ********************************************************************************
+ * Haru PDF Library
+ ********************************************************************************
+ */
+#cmakedefine USE_PDF
+
+/*
+ ********************************************************************************
+ * GD Library
+ ********************************************************************************
+ */
+#cmakedefine USE_GD
+
+/*
+ ********************************************************************************
+ * PLplot Library
+ ********************************************************************************
+ */
+#cmakedefine USE_PLPLOT
+
+/*
+ ********************************************************************************
+ * Mapping database to memory or opening it through libC
+ ********************************************************************************
+ */
+#cmakedefine USE_MMAP
+#ifndef USE_MMAP
+# undef __USE_MMAP__
+# define SETUP_DATABASE_ACCESS(fileoraddress) FILE* inSequence = fopen((fileoraddress), "r")
+# define GET_DATABASE_SEQUENCE(dest, offsets, id) ReadSequenceIndex((dest), (size_t) (id), inSequence, (offsets))
+# define UNSET_DATABASE_ACCESS() fclose(inSequence)
+#else
+# include <sys/mman.h>
+# define __USE_MMAP__
+# define SETUP_DATABASE_ACCESS(fileoraddress) const char * const restrict SequenceFileMap = (fileoraddress);
+# ifndef MMAP_DEBUG
+#  define GET_DATABASE_SEQUENCE(dest, offsets) MMAP_ReadSequenceIndex((dest), SequenceFileMap, (offsets), 0)
+# else
+#  define GET_DATABASE_SEQUENCE(dest, offsets) MMAP_ReadSequenceIndex((dest), SequenceFileMap, (offsets), 0\
+                                                   ,((struct ThreadData*) _Data)->threadId, 0, *(((struct ThreadData*) _Data)->maplength))
+# endif
+# define UNSET_DATABASE_ACCESS()
+#endif
+
+/*
+ ********************************************************************************
+ * PfTools versioning
+ ********************************************************************************
+ */
+#define PF_VERSION "${VERSION}"
+#define PF_MAJOR_VERSION ${MAJOR_VERSION}
+#define PF_MINOR_VERSION ${MINOR_VERSION}
+
+/*
+ ********************************************************************************
+ * Executable build using inline functions
+ ********************************************************************************
+ */
+#ifndef BUILD_LIBRARY
+#define __USE_INLINE_FUNCTIONS__
+#endif
+#endif /* _CONFIG_H */


=====================================
debian/missing-sources/get
=====================================
@@ -0,0 +1,5 @@
+#!/bin/sh
+# Upstream just forgot to include this file in the downloadable tarball
+# see https://github.com/sib-swiss/pftools3/issues/17
+wget https://raw.githubusercontent.com/sib-swiss/pftools3/master/src/C/config.h.cmake
+


=====================================
debian/rules
=====================================
@@ -7,6 +7,10 @@ include /usr/share/dpkg/default.mk
 %:
 	dh $@
 
+override_dh_auto_configure:
+	if [ ! -e src/C/config.h.cmake ] ; then cp -a debian/missing-sources/config.h.cmake src/C/ ; fi
+	dh_auto_configure
+
 override_dh_auto_install:
 	dh_auto_install
 	# Avoid name spacing conflict with htop and consequently also rename gtop



View it on GitLab: https://salsa.debian.org/med-team/pftools/-/commit/c9fa28f02f33b47f29a798a87e21f0991bbbbb49

-- 
View it on GitLab: https://salsa.debian.org/med-team/pftools/-/commit/c9fa28f02f33b47f29a798a87e21f0991bbbbb49
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