[med-svn] [Git][med-team/python-cgecore][master] 5 commits: New upstream version 1.5.6+ds

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / python-cgecore


Commits:
9875aef4 by Steffen Moeller at 2020-11-27T22:43:01+01:00
New upstream version 1.5.6+ds
- - - - -
c873700f by Steffen Moeller at 2020-11-27T22:43:01+01:00
routine-update: New upstream version

- - - - -
67b2ef52 by Steffen Moeller at 2020-11-27T22:43:02+01:00
Update upstream source from tag 'upstream/1.5.6+ds'

Update to upstream version '1.5.6+ds'
with Debian dir 15f85aa058a268f8a7de83265797b470f8ec7419
- - - - -
f518f71d by Steffen Moeller at 2020-11-27T22:43:02+01:00
routine-update: Standards-Version: 4.5.1

- - - - -
80f95cd5 by Steffen Moeller at 2020-11-27T22:43:18+01:00
routine-update: Ready to upload to unstable

- - - - -


5 changed files:

- PKG-INFO
- cgecore/__init__.py
- cgecore/blaster/blaster.py
- debian/changelog
- debian/control


Changes:

=====================================
PKG-INFO
=====================================
@@ -1,6 +1,6 @@
 Metadata-Version: 1.0
 Name: cgecore
-Version: 1.5.5
+Version: 1.5.6
 Summary: Center for Genomic Epidemiology Core Module
 Home-page: https://bitbucket.org/genomicepidemiology/cge_core_module
 Author: Center for Genomic Epidemiology


=====================================
cgecore/__init__.py
=====================================
@@ -13,7 +13,7 @@ from .argumentparsing import (check_file_type, get_arguments, get_string,
                               )
 
 #####################
-__version__ = "1.5.5"
+__version__ = "1.5.6"
 __all__ = [
     "argumentparsing",
     "cmdline",


=====================================
cgecore/blaster/blaster.py
=====================================
@@ -46,9 +46,9 @@ class Blaster():
                 print("Found " + out_file + " skipping DB.")
                 out, err = (b'', b'')
             else:
-                cmd = ("%s -subject %s -query %s -out %s -outfmt '5'"
+                cmd = ("%s -subject %s -query %s -out %s -outfmt 5"
                        " -perc_identity  %s -max_target_seqs %s"
-                       " -dust 'no'" % (blast, db_file, inputfile,
+                       " -dust no" % (blast, db_file, inputfile,
                                         out_file, threshold, max_target_seqs))
 
                 process = subprocess.Popen(cmd, shell=True,


=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+python-cgecore (1.5.6+ds-1) unstable; urgency=medium
+
+  * Team upload.
+  * New upstream version
+  * Standards-Version: 4.5.1 (routine-update)
+
+ -- Steffen Moeller <moeller at debian.org>  Fri, 27 Nov 2020 22:43:08 +0100
+
 python-cgecore (1.5.5+ds-1) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/control
=====================================
@@ -9,7 +9,7 @@ Build-Depends: debhelper-compat (= 13),
                python3,
                python3-setuptools,
                python3-biopython
-Standards-Version: 4.5.0
+Standards-Version: 4.5.1
 Vcs-Browser: https://salsa.debian.org/med-team/python-cgecore
 Vcs-Git: https://salsa.debian.org/med-team/python-cgecore.git
 Homepage: https://bitbucket.org/genomicepidemiology/cge_core_module/



View it on GitLab: https://salsa.debian.org/med-team/python-cgecore/-/compare/38617054f1f46a349c3a0a544641c67e6b549cb7...80f95cd5fd2dcc44efd86fd806e4d753f9d75e7d

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-cgecore/-/compare/38617054f1f46a349c3a0a544641c67e6b549cb7...80f95cd5fd2dcc44efd86fd806e4d753f9d75e7d
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