[med-svn] [Git][med-team/python-cgecore][upstream] New upstream version 1.5.6+ds

[Steffen Möller]

Steffen Möller pushed to branch upstream at Debian Med / python-cgecore


Commits:
9875aef4 by Steffen Moeller at 2020-11-27T22:43:01+01:00
New upstream version 1.5.6+ds
- - - - -


3 changed files:

- PKG-INFO
- cgecore/__init__.py
- cgecore/blaster/blaster.py


Changes:

=====================================
PKG-INFO
=====================================
@@ -1,6 +1,6 @@
 Metadata-Version: 1.0
 Name: cgecore
-Version: 1.5.5
+Version: 1.5.6
 Summary: Center for Genomic Epidemiology Core Module
 Home-page: https://bitbucket.org/genomicepidemiology/cge_core_module
 Author: Center for Genomic Epidemiology


=====================================
cgecore/__init__.py
=====================================
@@ -13,7 +13,7 @@ from .argumentparsing import (check_file_type, get_arguments, get_string,
                               )
 
 #####################
-__version__ = "1.5.5"
+__version__ = "1.5.6"
 __all__ = [
     "argumentparsing",
     "cmdline",


=====================================
cgecore/blaster/blaster.py
=====================================
@@ -46,9 +46,9 @@ class Blaster():
                 print("Found " + out_file + " skipping DB.")
                 out, err = (b'', b'')
             else:
-                cmd = ("%s -subject %s -query %s -out %s -outfmt '5'"
+                cmd = ("%s -subject %s -query %s -out %s -outfmt 5"
                        " -perc_identity  %s -max_target_seqs %s"
-                       " -dust 'no'" % (blast, db_file, inputfile,
+                       " -dust no" % (blast, db_file, inputfile,
                                         out_file, threshold, max_target_seqs))
 
                 process = subprocess.Popen(cmd, shell=True,



View it on GitLab: https://salsa.debian.org/med-team/python-cgecore/-/commit/9875aef4619fd85db0d3cd23c25cc2c5a47b5df9

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View it on GitLab: https://salsa.debian.org/med-team/python-cgecore/-/commit/9875aef4619fd85db0d3cd23c25cc2c5a47b5df9
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