[med-svn] [Git][med-team/resfinder][master] 6 commits: routine-update: New upstream version

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / resfinder


Commits:
000e4709 by Andreas Tille at 2020-10-03T12:00:25+02:00
routine-update: New upstream version

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cc6adbee by Andreas Tille at 2020-10-03T12:00:26+02:00
New upstream version 4.0.1
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1bcf941f by Andreas Tille at 2020-10-03T12:00:26+02:00
Update upstream source from tag 'upstream/4.0.1'

Update to upstream version '4.0.1'
with Debian dir ce34b28475d8b7a0f11152e7bae5601297ae714e
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a59407b3 by Andreas Tille at 2020-10-03T12:00:27+02:00
routine-update: debhelper-compat 13

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02f9bbea by Andreas Tille at 2020-10-03T13:27:35+02:00
resfinder.py is now run_resfinder.py

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982280bc by Andreas Tille at 2020-11-28T07:33:48+01:00
Add the test file that used to be in former versions upstream source

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30 changed files:

- .gitignore
- + .gitmodules
- README.md
- + cge/__init__.py
- + cge/out/beone.json
- + cge/out/exceptions.py
- + cge/out/parserdict.py
- + cge/out/result.py
- + cge/out/template.py
- + cge/out/test.py
- + cge/out/translate.py
- + cge/out/util/convert.py
- + cge/out/util/generator.py
- + cge/out/valueparsers.py
- + cge/output/__init__.py
- + cge/output/exceptions.py
- + cge/output/orderedset.py
- + cge/output/table.py
- + cge/output/trash/known_issues.txt
- + cge/output/trash/output.py
- + cge/output/trash/test.py
- + cge/phenotype2genotype/__init__.py
- + cge/phenotype2genotype/abclassdef.py
- + cge/phenotype2genotype/dbhit.py
- + cge/phenotype2genotype/feature.py
- + cge/phenotype2genotype/isolate.py
- + cge/phenotype2genotype/phenodbpoint.py
- + cge/phenotype2genotype/phenotype.py
- + cge/phenotype2genotype/res_profile.py
- + cge/phenotype2genotype/res_sumtable.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/resfinder/-/compare/8d64aa437abf5aa1fd20323db5bae84035d853bb...982280bcb58e653858329e982e1212a82b71c152

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View it on GitLab: https://salsa.debian.org/med-team/resfinder/-/compare/8d64aa437abf5aa1fd20323db5bae84035d853bb...982280bcb58e653858329e982e1212a82b71c152
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