[med-svn] [Git][med-team/python-cogent][master] 6 commits: numba is back in the archive

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / python-cogent


Commits:
b316c606 by Michael R. Crusoe at 2020-11-30T10:24:28+01:00
numba is back in the archive

- - - - -
4f0cee7e by Michael R. Crusoe at 2020-11-30T10:36:25+01:00
Only build for Python3.8 as numba does not yet support Python 3.9. See https://bugs.debian.org/972246

- - - - -
0b322ba7 by Michael R. Crusoe at 2020-11-30T10:37:04+01:00
routine-update: Standards-Version: 4.5.1

- - - - -
29c24ea6 by Michael R. Crusoe at 2020-11-30T10:37:09+01:00
Update renamed lintian tag names in lintian overrides.

Changes-By: lintian-brush
Fixes: lintian: renamed-tag
See-also: https://lintian.debian.org/tags/renamed-tag.html

- - - - -
4ac9f833 by Michael R. Crusoe at 2020-11-30T10:39:08+01:00
Mark Debian-specific patches as not needing forwarding.

- - - - -
6bb41983 by Michael R. Crusoe at 2020-11-30T10:39:30+01:00
routine-update: Ready to upload to unstable

- - - - -


6 changed files:

- debian/changelog
- debian/control
- debian/patches/fix_interpreter.patch
- debian/patches/sphinx.patch
- debian/python3-cogent3.lintian-overrides
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,4 +1,6 @@
-python-cogent (2020.6.30a0+dfsg-1) UNRELEASED; urgency=medium
+python-cogent (2020.6.30a0+dfsg-1) unstable; urgency=medium
+
+  * Team upload.
 
   [ Balint Reczey ]
   * New upstream version 2020.6.30a0+dfsg
@@ -6,11 +8,14 @@ python-cogent (2020.6.30a0+dfsg-1) UNRELEASED; urgency=medium
   [ Andreas Tille ]
   * debhelper-compat 13 (routine-update)
   * Rules-Requires-Root: no (routine-update)
-  TODO: Wait until python-numba is installable again (problem with 
-        ongoing testing transition known as auto-upperlimit-python3-llvmlite.)
-        Also check RFA bug #935626
 
- -- Balint Reczey <rbalint at ubuntu.com>  Fri, 03 Jul 2020 12:09:54 +0200
+  [ Michael R. Crusoe ]
+  * Only build for Python3.8 as numba does not yet support Python 3.9.
+    See https://bugs.debian.org/972246
+  * Standards-Version: 4.5.1 (routine-update)
+  * Mark Debian-specific patches as not needing forwarding.
+
+ -- Michael R. Crusoe <crusoe at debian.org>  Mon, 30 Nov 2020 10:39:30 +0100
 
 python-cogent (2020.2.7a+dfsg-2) unstable; urgency=medium
 


=====================================
debian/control
=====================================
@@ -25,7 +25,7 @@ Build-Depends: debhelper-compat (= 13),
                python3-sphinxcontrib.bibtex,
                cython3,
                pandoc
-Standards-Version: 4.5.0
+Standards-Version: 4.5.1
 Vcs-Browser: https://salsa.debian.org/med-team/python-cogent
 Vcs-Git: https://salsa.debian.org/med-team/python-cogent.git
 Homepage: https://github.com/cogent3/cogent3


=====================================
debian/patches/fix_interpreter.patch
=====================================
@@ -1,6 +1,7 @@
 Author: Andreas Tille <tille at debian.org>
 Last-Update: Tue, 07 Jan 2020 20:12:00 +0100
 Description: Fix broken interpreter lines
+Forwarded: not-needed
 
 --- a/src/cogent3/phylo/maximum_likelihood.py
 +++ b/src/cogent3/phylo/maximum_likelihood.py


=====================================
debian/patches/sphinx.patch
=====================================
@@ -1,6 +1,7 @@
 Author: Andreas Tille <tille at debian.org>
 Last-Update: Tue, 07 Jan 2020 20:12:00 +0100
 Description: Work around failure in sphinx doc processing
+Forwarded: not-needed
 
 --- a/doc/conf.py
 +++ b/doc/conf.py


=====================================
debian/python3-cogent3.lintian-overrides
=====================================
@@ -1,2 +1,2 @@
 # Test suite needs all these files
-python3-cogent3: duplicated-compressed-file *
+python3-cogent3: compressed-duplicate *


=====================================
debian/rules
=====================================
@@ -10,6 +10,8 @@ export PYBUILD_BEFORE_TEST=cp -r {dir}/tests/data {build_dir}
 
 export PYBUILD_NAME=cogent3
 
+export PYBUILD_DISABLE=3.9
+
 include /usr/share/dpkg/default.mk
 
 %:



View it on GitLab: https://salsa.debian.org/med-team/python-cogent/-/compare/3c8613318add1168f258255209b49ea0692a4d8c...6bb41983cf65f2a4682e64e784e2a9ead7700917

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-cogent/-/compare/3c8613318add1168f258255209b49ea0692a4d8c...6bb41983cf65f2a4682e64e784e2a9ead7700917
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