Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
fd689267 by Andreas Tille at 2020-11-30T13:54:05+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,146 +1,146 @@
-Last-Update: Mon, 30 Nov 2020 01:42:04 +0000
+Last-Update: Mon, 30 Nov 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 181 | {imaging,covid-19} |
- orthanc | 97 | {covid-19,imaging,practice} |
+ dcmtk | 183 | {imaging,covid-19} |
+ orthanc | 98 | {covid-19,imaging,practice} |
orthanc-wsi | 48 | {his,oncology,imaging,laboratory,covid-19,practice} |
gdcm | 37 | {imaging-dev} |
- htsjdk | 27 | {bio-dev} |
- dcm2niix | 22 | {imaging} |
+ htsjdk | 30 | {bio-dev} |
+ dcm2niix | 21 | {imaging} |
dicom3tools | 21 | {imaging} |
- gdcm | 20 | {covid-19,imaging} |
+ gdcm | 21 | {covid-19,imaging} |
dicomscope | 19 | {imaging} |
gnumed-server | 18 | {covid-19,practice} |
- ngs-sdk | 17 | {bio-dev} |
- adun.app | 14 | {bio} |
- gdcm | 14 | {imaging-dev} |
- invesalius | 13 | {imaging} |
- minc-tools | 13 | {imaging} |
- nifticlib | 13 | {imaging} |
- nifticlib | 12 | {imaging-dev} |
+ ngs-sdk | 18 | {bio-dev} |
+ adun.app | 15 | {bio} |
+ invesalius | 14 | {imaging} |
+ minc-tools | 14 | {imaging} |
+ nifticlib | 14 | {imaging} |
+ gdcm | 13 | {imaging-dev} |
ngs-sdk | 11 | {bio-dev} |
+ nifticlib | 11 | {imaging-dev} |
plastimatch | 11 | {imaging} |
- ngs-sdk | 10 | {bio-dev} |
openslide | 10 | {imaging} |
pixelmed | 10 | {imaging} |
biosig | 9 | {imaging,physics} |
- insighttoolkit4 | 9 | {imaging-dev} |
king | 9 | {imaging,typesetting} |
vtk-dicom | 9 | {imaging} |
+ librg-utils-perl | 8 | {bio} |
orthanc-webviewer | 8 | {imaging} |
- librg-utils-perl | 7 | {bio} |
+ biojava-live | 7 | {bio-dev} |
+ ea-utils | 7 | {bio} |
+ insighttoolkit4 | 7 | {imaging-dev} |
+ jebl2 | 7 | {bio-dev} |
+ melting | 7 | {cloud,bio} |
multiqc | 7 | {bio,covid-19} |
+ treeview | 7 | {bio-phylogeny,bio} |
bart-view | 6 | {imaging} |
- biojava-live | 6 | {bio-dev} |
- dicompyler | 6 | {oncology} |
- ea-utils | 6 | {bio} |
- jebl2 | 6 | {bio-dev} |
- melting | 6 | {cloud,bio} |
- obitools | 6 | {bio} |
pymia | 6 | {imaging-dev} |
seqsero | 6 | {bio} |
- treeview | 6 | {bio-phylogeny,bio} |
- elastix | 5 | {imaging} |
+ dicompyler | 5 | {oncology} |
+ fastlink | 5 | {bio,cloud} |
getdata | 5 | {bio} |
libdivsufsort | 5 | {bio-dev} |
- libminc | 5 | {imaging-dev} |
+ libpal-java | 5 | {bio-dev} |
+ mipe | 5 | {bio,cloud} |
mrs | 5 | {bio} |
+ obitools | 5 | {bio} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
+ paraclu | 5 | {bio,cloud} |
+ rambo-k | 5 | {bio} |
+ salmon | 5 | {covid-19,bio} |
+ spread-phy | 5 | {bio,bio-phylogeny} |
+ stacks | 5 | {bio} |
+ staden | 5 | {bio} |
+ anfo | 4 | {bio,cloud} |
+ arden | 4 | {cloud,bio} |
bamkit | 4 | {bio,covid-19} |
+ beast-mcmc | 4 | {bio-phylogeny,bio} |
biomaj3-cli | 4 | {cloud} |
bio-tradis | 4 | {bio-dev,bio} |
+ elastix | 4 | {imaging} |
+ embassy-domainatrix | 4 | {cloud,bio} |
+ embassy-domalign | 4 | {bio,cloud} |
emboss-explorer | 4 | {bio} |
- fastlink | 4 | {bio,cloud} |
+ jmodeltest | 4 | {bio,bio-phylogeny} |
+ libminc | 4 | {imaging-dev} |
+ libncl | 4 | {bio} |
libsbml | 4 | {bio-dev} |
- mipe | 4 | {bio,cloud} |
+ metaphlan2 | 4 | {bio} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
- paraclu | 4 | {bio,cloud} |
- rambo-k | 4 | {bio} |
- salmon | 4 | {covid-19,bio} |
- spread-phy | 4 | {bio,bio-phylogeny} |
- stacks | 4 | {bio} |
- staden | 4 | {bio} |
+ phybin | 4 | {bio} |
+ phyutility | 4 | {bio,cloud} |
+ piler | 4 | {bio} |
+ placnet | 4 | {bio} |
+ predictprotein | 4 | {bio} |
+ prottest | 4 | {bio-phylogeny,bio} |
+ saint | 4 | {bio} |
+ sibsim4 | 4 | {cloud,bio} |
+ spaced | 4 | {bio} |
tracetuner | 4 | {bio} |
- anfo | 3 | {bio,cloud} |
- arden | 3 | {cloud,bio} |
assemblytics | 3 | {bio} |
- beast-mcmc | 3 | {bio-phylogeny,bio} |
biomaj3-daemon | 3 | {bio} |
bitseq | 3 | {bio} |
+ brig | 3 | {bio} |
clonalframeml | 3 | {covid-19,bio} |
clonalorigin | 3 | {bio} |
- embassy-domainatrix | 3 | {cloud,bio} |
- embassy-domalign | 3 | {bio,cloud} |
+ dindel | 3 | {bio} |
+ ecopcr | 3 | {bio} |
+ embassy-domsearch | 3 | {bio,cloud} |
+ fastml | 3 | {bio} |
+ fsm-lite | 3 | {bio} |
ghmm | 3 | {bio} |
+ ipig | 3 | {bio} |
lagan | 3 | {bio} |
lamarc | 3 | {bio} |
- libncl | 3 | {bio} |
- libpal-java | 3 | {bio-dev} |
+ librdp-taxonomy-tree-java | 3 | {bio-dev} |
logol | 3 | {bio} |
- metaphlan2 | 3 | {bio} |
+ mauve-aligner | 3 | {bio} |
+ mhap | 3 | {bio-ngs,bio} |
+ microbegps | 3 | {bio} |
+ pbdagcon | 3 | {bio} |
+ perm | 3 | {cloud,bio} |
phast | 3 | {bio} |
- phybin | 3 | {bio} |
- phyutility | 3 | {bio,cloud} |
- piler | 3 | {bio} |
- predictprotein | 3 | {bio} |
- prottest | 3 | {bio-phylogeny,bio} |
+ prime-phylo | 3 | {bio,cloud} |
+ proalign | 3 | {bio-phylogeny,bio} |
quorum | 3 | {bio} |
+ rdp-alignment | 3 | {bio} |
+ rdp-classifier | 3 | {bio} |
+ rtax | 3 | {bio,cloud} |
runcircos-gui | 3 | {bio} |
- saint | 3 | {bio} |
- sibsim4 | 3 | {cloud,bio} |
+ scrm | 3 | {bio} |
+ sga | 3 | {bio} |
sight | 3 | {imaging} |
- spaced | 3 | {bio} |
+ sprai | 3 | {bio} |
+ suitename | 3 | {bio} |
+ surankco | 3 | {bio} |
+ zalign | 3 | {bio,cloud} |
biosig | 2 | {physics,imaging-dev} |
- brig | 2 | {bio} |
+ blasr | 2 | {bio,bio-ngs} |
busco | 2 | {covid-19,bio} |
canu | 2 | {bio} |
- dindel | 2 | {bio} |
- ecopcr | 2 | {bio} |
- embassy-domsearch | 2 | {bio,cloud} |
estscan | 2 | {bio} |
- fastml | 2 | {bio} |
- fsm-lite | 2 | {bio} |
hinge | 2 | {bio} |
- ipig | 2 | {bio} |
jellyfish1 | 2 | {bio} |
- jmodeltest | 2 | {bio,bio-phylogeny} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libmuscle | 2 | {bio-dev} |
- librdp-taxonomy-tree-java | 2 | {bio-dev} |
- mauve-aligner | 2 | {bio} |
- mhap | 2 | {bio-ngs,bio} |
- microbegps | 2 | {bio} |
oscar | 2 | {data,tools,practice} |
papyrus | 2 | {imaging-dev} |
- pbdagcon | 2 | {bio} |
- perm | 2 | {cloud,bio} |
- placnet | 2 | {bio} |
- prime-phylo | 2 | {bio,cloud} |
- proalign | 2 | {bio-phylogeny,bio} |
pscan-chip | 2 | {bio} |
qcumber | 2 | {bio} |
- rdp-alignment | 2 | {bio} |
- rdp-classifier | 2 | {bio} |
- rtax | 2 | {bio,cloud} |
samblaster | 2 | {covid-19,bio} |
samtools-legacy | 2 | {bio-dev} |
- scrm | 2 | {bio} |
seqan | 2 | {bio-dev} |
- sga | 2 | {bio} |
soapaligner | 2 | {bio} |
soapsnp | 2 | {bio} |
- sprai | 2 | {bio} |
- suitename | 2 | {bio} |
- surankco | 2 | {bio} |
yaha | 2 | {bio} |
- zalign | 2 | {bio,cloud} |
+ acedb | 1 | {bio,cloud} |
atropos | 1 | {bio} |
bambamc | 1 | {bio-dev} |
bbmap | 1 | {covid-19,bio} |
biosig | 1 | {physics,imaging-dev} |
- blasr | 1 | {bio,bio-ngs} |
blimps | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
ctn | 1 | {imaging-dev} |
@@ -188,7 +188,6 @@ Last-Update: Mon, 30 Nov 2020 01:42:04 +0000
tvc | 1 | {bio} |
vienna-rna | 1 | {bio,covid-19} |
yanagiba | 1 | {covid-19,bio} |
- acedb | 0 | {bio,cloud} |
biojava4-live | 0 | {bio-dev} |
biosig | 0 | {physics} |
biosyntax | 0 | {bio} |
@@ -239,5 +238,5 @@ Last-Update: Mon, 30 Nov 2020 01:42:04 +0000
orthanc-python | -1 | {covid-19} |
sight | -1 | {imaging-dev} |
svim | -1 | {bio} |
-(267 rows)
+(266 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fd689267dfe347f3cee36e29e2c5bb4f291f2ab4
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fd689267dfe347f3cee36e29e2c5bb4f291f2ab4
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