Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
125058fe by Andreas Tille at 2020-10-06T13:45:07+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,158 +1,158 @@
-Last-Update: Tue, 06 Oct 2020 01:42:04 +0000
+Last-Update: Tue, 06 Oct 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 161 | {imaging,covid-19} |
- orthanc | 82 | {practice,covid-19,imaging} |
- orthanc-wsi | 46 | {his,laboratory,covid-19,imaging,practice,oncology} |
- gdcm | 38 | {imaging-dev} |
- dicom3tools | 31 | {imaging} |
- dicomscope | 27 | {imaging} |
- htsjdk | 25 | {bio-dev} |
- ngs-sdk | 19 | {bio-dev} |
+ dcmtk | 163 | {imaging,covid-19} |
+ orthanc | 84 | {practice,covid-19,imaging} |
+ orthanc-wsi | 47 | {his,laboratory,covid-19,imaging,practice,oncology} |
+ gdcm | 36 | {imaging-dev} |
+ dicom3tools | 30 | {imaging} |
+ dicomscope | 26 | {imaging} |
+ htsjdk | 23 | {bio-dev} |
+ ngs-sdk | 18 | {bio-dev} |
dcm2niix | 17 | {imaging} |
gdcm | 17 | {covid-19,imaging} |
- gnumed-server | 17 | {covid-19,practice} |
- gdcm | 16 | {imaging-dev} |
+ gdcm | 17 | {imaging-dev} |
+ gnumed-server | 16 | {covid-19,practice} |
invesalius | 15 | {imaging} |
- adun.app | 12 | {bio} |
- nifticlib | 12 | {imaging} |
+ nifticlib | 12 | {imaging-dev} |
pixelmed | 12 | {imaging} |
- minc-tools | 11 | {imaging} |
- nifticlib | 11 | {imaging-dev} |
- melting | 10 | {cloud,bio} |
- openslide | 10 | {imaging} |
- insighttoolkit4 | 9 | {imaging-dev} |
+ adun.app | 11 | {bio} |
+ nifticlib | 11 | {imaging} |
+ insighttoolkit4 | 10 | {imaging-dev} |
+ minc-tools | 10 | {imaging} |
+ melting | 9 | {cloud,bio} |
+ openslide | 9 | {imaging} |
plastimatch | 9 | {imaging} |
biosig4c++ | 8 | {physics,imaging} |
- fastlink | 8 | {bio,cloud} |
- librg-utils-perl | 8 | {bio} |
- orthanc-webviewer | 8 | {imaging} |
- salmon | 8 | {covid-19,bio} |
- sibsim4 | 8 | {bio,cloud} |
- stacks | 8 | {bio} |
vtk-dicom | 8 | {imaging} |
- anfo | 7 | {cloud,bio} |
bart-view | 7 | {imaging} |
biojava-live | 7 | {bio-dev} |
dicompyler | 7 | {oncology} |
- jebl2 | 7 | {bio-dev} |
- king | 7 | {typesetting,imaging} |
- libncl | 7 | {bio} |
- mipe | 7 | {cloud,bio} |
+ fastlink | 7 | {bio,cloud} |
ngs-sdk | 7 | {bio-dev} |
+ orthanc-webviewer | 7 | {imaging} |
phyutility | 7 | {bio,cloud} |
- treeview | 7 | {bio,bio-phylogeny} |
- embassy-domainatrix | 6 | {cloud,bio} |
- embassy-domalign | 6 | {cloud,bio} |
- embassy-domsearch | 6 | {cloud,bio} |
- gatb-core | 6 | {bio} |
- jellyfish1 | 6 | {bio} |
- libdivsufsort | 6 | {bio-dev} |
+ sibsim4 | 7 | {bio,cloud} |
+ stacks | 7 | {bio} |
+ anfo | 6 | {cloud,bio} |
+ elastix | 6 | {imaging} |
+ jebl2 | 6 | {bio-dev} |
+ king | 6 | {typesetting,imaging} |
+ libncl | 6 | {bio} |
+ librg-utils-perl | 6 | {bio} |
+ mipe | 6 | {cloud,bio} |
multiqc | 6 | {bio,covid-19} |
- paraclu | 6 | {bio,cloud} |
- perm | 6 | {cloud,bio} |
- piler | 6 | {bio} |
- radiant | 6 | {bio} |
- saint | 6 | {bio} |
- spread-phy | 6 | {bio-phylogeny,bio} |
- staden | 6 | {bio} |
- beast-mcmc | 5 | {bio,bio-phylogeny} |
- dindel | 5 | {bio} |
- ea-utils | 5 | {bio} |
- ecopcr | 5 | {bio} |
- elastix | 5 | {imaging} |
- fastml | 5 | {bio} |
- fsm-lite | 5 | {bio} |
- ipig | 5 | {bio} |
- lagan | 5 | {bio} |
- librdp-taxonomy-tree-java | 5 | {bio-dev} |
- mhap | 5 | {bio-ngs,bio} |
- neobio | 5 | {cloud,bio} |
+ salmon | 6 | {covid-19,bio} |
+ treeview | 6 | {bio,bio-phylogeny} |
+ embassy-domainatrix | 5 | {cloud,bio} |
+ embassy-domalign | 5 | {cloud,bio} |
+ embassy-domsearch | 5 | {cloud,bio} |
+ gatb-core | 5 | {bio} |
+ jellyfish1 | 5 | {bio} |
+ libdivsufsort | 5 | {bio-dev} |
nutsqlite | 5 | {tools} |
obitools | 5 | {bio} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
- phybin | 5 | {bio} |
- placnet | 5 | {bio} |
- proalign | 5 | {bio,bio-phylogeny} |
+ paraclu | 5 | {bio,cloud} |
+ perm | 5 | {cloud,bio} |
+ piler | 5 | {bio} |
pymia | 5 | {imaging-dev} |
- rdp-classifier | 5 | {bio} |
- rtax | 5 | {cloud,bio} |
- samblaster | 5 | {covid-19,bio} |
- scrm | 5 | {bio} |
- spaced | 5 | {bio} |
- sprai | 5 | {bio} |
- suitename | 5 | {bio} |
- tracetuner | 5 | {bio} |
- alter-sequence-alignment | 4 | {bio} |
- arden | 4 | {cloud,bio} |
- assemblytics | 4 | {bio} |
+ radiant | 5 | {bio} |
+ saint | 5 | {bio} |
+ spread-phy | 5 | {bio-phylogeny,bio} |
+ staden | 5 | {bio} |
+ beast-mcmc | 4 | {bio,bio-phylogeny} |
biomaj3-cli | 4 | {cloud} |
- bitseq | 4 | {bio} |
- brig | 4 | {bio} |
- clonalframeml | 4 | {bio,covid-19} |
- clonalorigin | 4 | {bio} |
- delly | 4 | {covid-19,bio} |
- estscan | 4 | {bio} |
- ghmm | 4 | {bio} |
- hinge | 4 | {bio} |
- jmodeltest | 4 | {bio-phylogeny,bio} |
- lamarc | 4 | {bio} |
- libpal-java | 4 | {bio-dev} |
+ dindel | 4 | {bio} |
+ ea-utils | 4 | {bio} |
+ ecopcr | 4 | {bio} |
+ fastml | 4 | {bio} |
+ fsm-lite | 4 | {bio} |
+ ipig | 4 | {bio} |
+ lagan | 4 | {bio} |
+ librdp-taxonomy-tree-java | 4 | {bio-dev} |
mauve-aligner | 4 | {bio} |
- metaphlan2 | 4 | {bio} |
- microbegps | 4 | {bio} |
- phast | 4 | {bio} |
- plasmidseeker | 4 | {bio} |
- predictprotein | 4 | {bio} |
- prime-phylo | 4 | {cloud,bio} |
- prottest | 4 | {bio,bio-phylogeny} |
- pscan-chip | 4 | {bio} |
- quorum | 4 | {bio} |
- rambo-k | 4 | {bio} |
- rdp-alignment | 4 | {bio} |
- relion | 4 | {bio} |
- runcircos-gui | 4 | {bio} |
- segemehl | 4 | {bio} |
- sga | 4 | {bio} |
- soapaligner | 4 | {bio} |
- soapsnp | 4 | {bio} |
- surankco | 4 | {bio} |
- tvc | 4 | {bio} |
- velvetoptimiser | 4 | {bio} |
- yaha | 4 | {bio} |
- zalign | 4 | {cloud,bio} |
+ mhap | 4 | {bio-ngs,bio} |
+ neobio | 4 | {cloud,bio} |
+ phybin | 4 | {bio} |
+ placnet | 4 | {bio} |
+ proalign | 4 | {bio,bio-phylogeny} |
+ rdp-classifier | 4 | {bio} |
+ rtax | 4 | {cloud,bio} |
+ samblaster | 4 | {covid-19,bio} |
+ scrm | 4 | {bio} |
+ spaced | 4 | {bio} |
+ sprai | 4 | {bio} |
+ suitename | 4 | {bio} |
+ tracetuner | 4 | {bio} |
+ alter-sequence-alignment | 3 | {bio} |
+ arden | 3 | {cloud,bio} |
+ assemblytics | 3 | {bio} |
biomaj3-daemon | 3 | {bio} |
- blasr | 3 | {bio-ngs,bio} |
- busco | 3 | {bio,covid-19} |
+ bitseq | 3 | {bio} |
+ brig | 3 | {bio} |
+ clonalframeml | 3 | {bio,covid-19} |
+ clonalorigin | 3 | {bio} |
+ delly | 3 | {covid-19,bio} |
+ estscan | 3 | {bio} |
getdata | 3 | {bio} |
+ ghmm | 3 | {bio} |
+ hinge | 3 | {bio} |
+ jmodeltest | 3 | {bio-phylogeny,bio} |
+ lamarc | 3 | {bio} |
libminc | 3 | {imaging-dev} |
- logol | 3 | {bio} |
- murasaki | 3 | {bio} |
+ libpal-java | 3 | {bio-dev} |
+ libsbml | 3 | {bio-dev} |
+ metaphlan2 | 3 | {bio} |
+ microbegps | 3 | {bio} |
orthanc-postgresql | 3 | {imaging} |
- pbdagcon | 3 | {bio} |
- qcumber | 3 | {bio} |
- seqsero | 3 | {bio} |
- bio-tradis | 2 | {bio,bio-dev} |
- canu | 2 | {bio} |
+ phast | 3 | {bio} |
+ plasmidseeker | 3 | {bio} |
+ predictprotein | 3 | {bio} |
+ prime-phylo | 3 | {cloud,bio} |
+ prottest | 3 | {bio,bio-phylogeny} |
+ pscan-chip | 3 | {bio} |
+ quorum | 3 | {bio} |
+ rambo-k | 3 | {bio} |
+ rdp-alignment | 3 | {bio} |
+ relion | 3 | {bio} |
+ runcircos-gui | 3 | {bio} |
+ segemehl | 3 | {bio} |
+ sga | 3 | {bio} |
+ soapaligner | 3 | {bio} |
+ soapsnp | 3 | {bio} |
+ surankco | 3 | {bio} |
+ tvc | 3 | {bio} |
+ velvetoptimiser | 3 | {bio} |
+ yaha | 3 | {bio} |
+ zalign | 3 | {cloud,bio} |
+ blasr | 2 | {bio-ngs,bio} |
+ busco | 2 | {bio,covid-19} |
emboss-explorer | 2 | {bio} |
libctapimkt | 2 | {practice} |
- libsbml | 2 | {bio-dev} |
+ logol | 2 | {bio} |
mrs | 2 | {bio} |
+ murasaki | 2 | {bio} |
ncbi-vdb | 2 | {bio-dev} |
ngs-sdk | 2 | {bio-dev} |
opencfu | 2 | {laboratory} |
openslide | 2 | {imaging-dev} |
orthanc-mysql | 2 | {imaging} |
papyrus | 2 | {imaging-dev} |
+ pbdagcon | 2 | {bio} |
+ qcumber | 2 | {bio} |
samtools-legacy | 2 | {bio-dev} |
seqan | 2 | {bio-dev} |
+ seqsero | 2 | {bio} |
sight | 2 | {imaging} |
simpleitk | 2 | {imaging-dev} |
trace2dbest | 2 | {bio} |
atropos | 1 | {bio} |
biosig4c++ | 1 | {physics,imaging-dev} |
+ bio-tradis | 1 | {bio,bio-dev} |
blimps | 1 | {bio} |
+ canu | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
conda-package-handling | 1 | {bio-dev,bio} |
ctn | 1 | {imaging-dev} |
@@ -161,7 +161,6 @@ Last-Update: Tue, 06 Oct 2020 01:42:04 +0000
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
htscodecs | 1 | {covid-19,bio-dev} |
- kma | 1 | {bio} |
kmerresistance | 1 | {bio} |
libmaus2 | 1 | {covid-19,bio-dev} |
libseqlib | 1 | {bio-dev} |
@@ -176,6 +175,7 @@ Last-Update: Tue, 06 Oct 2020 01:42:04 +0000
sift | 1 | {bio} |
skesa | 1 | {bio} |
stringtie | 1 | {bio,covid-19} |
+ vienna-rna | 1 | {covid-19,bio} |
acedb | 0 | {cloud,bio} |
bambamc | 0 | {bio-dev} |
bamkit | 0 | {covid-19,bio} |
@@ -226,8 +226,8 @@ Last-Update: Tue, 06 Oct 2020 01:42:04 +0000
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {bio,covid-19} |
pplacer | 0 | {covid-19,bio,bio-phylogeny} |
- relion | 0 | {bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
scrappie | 0 | {covid-19,bio} |
@@ -241,12 +241,11 @@ Last-Update: Tue, 06 Oct 2020 01:42:04 +0000
tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
varscan | 0 | {bio,covid-19} |
- vienna-rna | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
yanagiba | 0 | {bio,covid-19} |
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
shovill | -1 | {bio,covid-19} |
sight | -1 | {imaging-dev} |
-(275 rows)
+(274 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/125058fec74a2f0b0e123a2b8e8788168f01b018
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/125058fec74a2f0b0e123a2b8e8788168f01b018
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