[med-svn] [Git][med-team/velvetoptimiser][master] 10 commits: Add autopkgtests

[Nilesh Patra]

Nilesh Patra pushed to branch master at Debian Med / velvetoptimiser


Commits:
b7924b03 by Nilesh Patra at 2020-10-09T13:56:42+00:00
Add autopkgtests

- - - - -
42a6bb5c by Nilesh Patra at 2020-10-09T19:45:30+05:30
Fix shebang

- - - - -
2d472cd4 by Nilesh Patra at 2020-10-09T19:45:59+05:30
Update changelog

- - - - -
b65593a3 by Nilesh Patra at 2020-10-09T19:46:20+05:30
routine-update: Standards-Version: 4.5.0

- - - - -
d7fc0060 by Nilesh Patra at 2020-10-09T19:46:20+05:30
routine-update: debhelper-compat 13

- - - - -
48a3856a by Nilesh Patra at 2020-10-09T19:46:29+05:30
routine-update: Remove trailing whitespace in debian/rules

- - - - -
252a6b7c by Nilesh Patra at 2020-10-09T19:46:30+05:30
routine-update: Add salsa-ci file

- - - - -
80c4e9b7 by Nilesh Patra at 2020-10-09T19:46:30+05:30
routine-update: Rules-Requires-Root: no

- - - - -
ae6566f6 by Nilesh Patra at 2020-10-09T19:46:40+05:30
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.

Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html

- - - - -
2abd77be by Nilesh Patra at 2020-10-09T19:46:41+05:30
routine-update: Ready to upload to unstable

- - - - -


8 changed files:

- debian/changelog
- − debian/compat
- debian/control
- debian/rules
- + debian/salsa-ci.yml
- + debian/tests/control
- + debian/tests/run-unit-test
- debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,22 @@
+velvetoptimiser (2.2.6-3) unstable; urgency=medium
+
+  * Team Upload.
+  [ Steffen Möller ]
+  * Update metadata with ref to conda
+
+  [ Nilesh Patra ]
+  * Add autopkgtests
+  * Fix shebang
+  * Standards-Version: 4.5.0 (routine-update)
+  * debhelper-compat 13 (routine-update)
+  * Remove trailing whitespace in debian/rules (routine-update)
+  * Add salsa-ci file (routine-update)
+  * Rules-Requires-Root: no (routine-update)
+  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
+    Repository-Browse.
+
+ -- Nilesh Patra <npatra974 at gmail.com>  Fri, 09 Oct 2020 19:46:41 +0530
+
 velvetoptimiser (2.2.6-2) unstable; urgency=medium
 
   * debhelper 11


=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11


=====================================
debian/control
=====================================
@@ -4,11 +4,12 @@ Uploaders: Tim Booth <tbooth at ceh.ac.uk>,
            Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~)
-Standards-Version: 4.1.4
+Build-Depends: debhelper-compat (= 13)
+Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/velvetoptimiser
 Vcs-Git: https://salsa.debian.org/med-team/velvetoptimiser.git
 Homepage: https://github.com/tseemann/VelvetOptimiser/
+Rules-Requires-Root: no
 
 Package: velvetoptimiser
 Architecture: all


=====================================
debian/rules
=====================================
@@ -6,10 +6,11 @@
 
 
 %:
-	dh $@ 
+	dh $@
 
 override_dh_auto_build:
 	grep -v FindBin VelvetOptimiser.pl > velvetoptimiser
+	sed -i 's|#!/usr/bin/env perl|#!/usr/bin/perl|g' velvetoptimiser
 
 override_dh_auto_clean:
 	rm -f velvetoptimiser


=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml


=====================================
debian/tests/control
=====================================
@@ -0,0 +1,4 @@
+Tests: run-unit-test
+Depends: @, procps
+Restrictions: allow-stderr
+


=====================================
debian/tests/run-unit-test
=====================================
@@ -0,0 +1,18 @@
+#!/bin/bash
+set -e
+
+pkg=velvetoptimiser
+CUR_DIR=`pwd`
+
+if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
+  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
+  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp ${CUR_DIR}/test/* -a "${AUTOPKGTEST_TMP}"
+
+cd "${AUTOPKGTEST_TMP}"
+
+sed -i 's/VelvetOptimiser.pl/velvetoptimiser/' run_test.sh
+
+/bin/sh run_test.sh


=====================================
debian/upstream/metadata
=====================================
@@ -1,3 +1,5 @@
+Bug-Database: https://github.com/tseemann/VelvetOptimiser/issues
+Bug-Submit: https://github.com/tseemann/VelvetOptimiser/issues/new
 Registry:
  - Name: OMICtools
    Entry: OMICS_14601
@@ -7,3 +9,5 @@ Registry:
    Entry: perl-velvetoptimiser
  - Name: SciCrunch
    Entry: NA
+Repository: https://github.com/tseemann/VelvetOptimiser.git
+Repository-Browse: https://github.com/tseemann/VelvetOptimiser



View it on GitLab: https://salsa.debian.org/med-team/velvetoptimiser/-/compare/f5c5ef44aace6ecc73d01e966ec97785a8a94dc8...2abd77beebf446dbabe5708eeee72fcf281192fb

-- 
View it on GitLab: https://salsa.debian.org/med-team/velvetoptimiser/-/compare/f5c5ef44aace6ecc73d01e966ec97785a8a94dc8...2abd77beebf446dbabe5708eeee72fcf281192fb
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20201009/8abebf87/attachment-0001.html>