Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
44a622cd by Andreas Tille at 2020-10-10T13:44:58+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,66 +1,66 @@
-Last-Update: Sat, 10 Oct 2020 01:42:05 +0000
+Last-Update: Sat, 10 Oct 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 165 | {imaging,covid-19} |
- orthanc | 87 | {practice,covid-19,imaging} |
- orthanc-wsi | 49 | {his,laboratory,covid-19,imaging,practice,oncology} |
- gdcm | 36 | {imaging-dev} |
+ dcmtk | 167 | {imaging,covid-19} |
+ orthanc | 88 | {practice,imaging,covid-19} |
+ orthanc-wsi | 48 | {oncology,his,laboratory,practice,imaging,covid-19} |
+ gdcm | 35 | {imaging-dev} |
dicom3tools | 30 | {imaging} |
dicomscope | 27 | {imaging} |
- htsjdk | 21 | {bio-dev} |
- dcm2niix | 18 | {imaging} |
- gdcm | 18 | {covid-19,imaging} |
+ htsjdk | 22 | {bio-dev} |
+ gdcm | 18 | {imaging,covid-19} |
+ dcm2niix | 17 | {imaging} |
gdcm | 17 | {imaging-dev} |
gnumed-server | 16 | {covid-19,practice} |
ngs-sdk | 16 | {bio-dev} |
invesalius | 15 | {imaging} |
nifticlib | 12 | {imaging-dev} |
+ pixelmed | 12 | {imaging} |
minc-tools | 11 | {imaging} |
nifticlib | 11 | {imaging} |
- pixelmed | 11 | {imaging} |
- vtk-dicom | 11 | {imaging} |
adun.app | 10 | {bio} |
- biosig4c++ | 10 | {physics,imaging} |
+ biosig4c++ | 10 | {imaging,physics} |
insighttoolkit4 | 10 | {imaging-dev} |
melting | 10 | {cloud,bio} |
plastimatch | 10 | {imaging} |
+ vtk-dicom | 10 | {imaging} |
openslide | 9 | {imaging} |
ngs-sdk | 8 | {bio-dev} |
bart-view | 7 | {imaging} |
biojava-live | 7 | {bio-dev} |
- fastlink | 7 | {bio,cloud} |
+ fastlink | 7 | {cloud,bio} |
librg-utils-perl | 7 | {bio} |
orthanc-webviewer | 7 | {imaging} |
- phyutility | 7 | {bio,cloud} |
+ phyutility | 7 | {cloud,bio} |
+ salmon | 7 | {bio,covid-19} |
sibsim4 | 7 | {bio,cloud} |
stacks | 7 | {bio} |
anfo | 6 | {cloud,bio} |
dicompyler | 6 | {oncology} |
jebl2 | 6 | {bio-dev} |
- king | 6 | {typesetting,imaging} |
+ king | 6 | {imaging,typesetting} |
libncl | 6 | {bio} |
mipe | 6 | {cloud,bio} |
multiqc | 6 | {bio,covid-19} |
- salmon | 6 | {covid-19,bio} |
- treeview | 6 | {bio,bio-phylogeny} |
+ staden | 6 | {bio} |
+ treeview | 6 | {bio-phylogeny,bio} |
ea-utils | 5 | {bio} |
elastix | 5 | {imaging} |
- embassy-domainatrix | 5 | {cloud,bio} |
- embassy-domalign | 5 | {cloud,bio} |
- embassy-domsearch | 5 | {cloud,bio} |
+ embassy-domainatrix | 5 | {bio,cloud} |
+ embassy-domalign | 5 | {bio,cloud} |
+ embassy-domsearch | 5 | {bio,cloud} |
gatb-core | 5 | {bio} |
jellyfish1 | 5 | {bio} |
libdivsufsort | 5 | {bio-dev} |
obitools | 5 | {bio} |
- orthanc-dicomweb | 5 | {covid-19,imaging} |
- paraclu | 5 | {bio,cloud} |
+ orthanc-dicomweb | 5 | {imaging,covid-19} |
+ paraclu | 5 | {cloud,bio} |
perm | 5 | {cloud,bio} |
piler | 5 | {bio} |
pymia | 5 | {imaging-dev} |
saint | 5 | {bio} |
spread-phy | 5 | {bio-phylogeny,bio} |
- staden | 5 | {bio} |
beast-mcmc | 4 | {bio,bio-phylogeny} |
biomaj3-cli | 4 | {cloud} |
dindel | 4 | {bio} |
@@ -72,8 +72,8 @@ Last-Update: Sat, 10 Oct 2020 01:42:05 +0000
librdp-taxonomy-tree-java | 4 | {bio-dev} |
libsbml | 4 | {bio-dev} |
mauve-aligner | 4 | {bio} |
- mhap | 4 | {bio-ngs,bio} |
- neobio | 4 | {cloud,bio} |
+ mhap | 4 | {bio,bio-ngs} |
+ neobio | 4 | {bio,cloud} |
nutsqlite | 4 | {tools} |
phybin | 4 | {bio} |
placnet | 4 | {bio} |
@@ -81,15 +81,15 @@ Last-Update: Sat, 10 Oct 2020 01:42:05 +0000
proalign | 4 | {bio,bio-phylogeny} |
radiant | 4 | {bio} |
rdp-classifier | 4 | {bio} |
- rtax | 4 | {cloud,bio} |
- samblaster | 4 | {covid-19,bio} |
+ rtax | 4 | {bio,cloud} |
+ samblaster | 4 | {bio,covid-19} |
scrm | 4 | {bio} |
spaced | 4 | {bio} |
sprai | 4 | {bio} |
suitename | 4 | {bio} |
tracetuner | 4 | {bio} |
alter-sequence-alignment | 3 | {bio} |
- arden | 3 | {cloud,bio} |
+ arden | 3 | {bio,cloud} |
assemblytics | 3 | {bio} |
biomaj3-daemon | 3 | {bio} |
bitseq | 3 | {bio} |
@@ -101,7 +101,7 @@ Last-Update: Sat, 10 Oct 2020 01:42:05 +0000
getdata | 3 | {bio} |
ghmm | 3 | {bio} |
hinge | 3 | {bio} |
- jmodeltest | 3 | {bio-phylogeny,bio} |
+ jmodeltest | 3 | {bio,bio-phylogeny} |
lamarc | 3 | {bio} |
libminc | 3 | {imaging-dev} |
libpal-java | 3 | {bio-dev} |
@@ -111,7 +111,7 @@ Last-Update: Sat, 10 Oct 2020 01:42:05 +0000
phast | 3 | {bio} |
plasmidseeker | 3 | {bio} |
prime-phylo | 3 | {cloud,bio} |
- prottest | 3 | {bio,bio-phylogeny} |
+ prottest | 3 | {bio-phylogeny,bio} |
pscan-chip | 3 | {bio} |
quorum | 3 | {bio} |
rambo-k | 3 | {bio} |
@@ -122,11 +122,10 @@ Last-Update: Sat, 10 Oct 2020 01:42:05 +0000
soapaligner | 3 | {bio} |
soapsnp | 3 | {bio} |
tvc | 3 | {bio} |
- velvetoptimiser | 3 | {bio} |
yaha | 3 | {bio} |
- zalign | 3 | {cloud,bio} |
+ zalign | 3 | {bio,cloud} |
blasr | 2 | {bio-ngs,bio} |
- busco | 2 | {bio,covid-19} |
+ busco | 2 | {covid-19,bio} |
emboss-explorer | 2 | {bio} |
libctapimkt | 2 | {practice} |
logol | 2 | {bio} |
@@ -144,48 +143,50 @@ Last-Update: Sat, 10 Oct 2020 01:42:05 +0000
simpleitk | 2 | {imaging-dev} |
surankco | 2 | {bio} |
trace2dbest | 2 | {bio} |
- acedb | 1 | {cloud,bio} |
+ acedb | 1 | {bio,cloud} |
atropos | 1 | {bio} |
biosig4c++ | 1 | {physics,imaging-dev} |
+ biosig4c++ | 1 | {imaging-dev,physics} |
bio-tradis | 1 | {bio,bio-dev} |
blimps | 1 | {bio} |
canu | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
- conda-package-handling | 1 | {bio-dev,bio} |
+ conda-package-handling | 1 | {bio,bio-dev} |
ctn | 1 | {imaging-dev} |
cufflinks | 1 | {bio,cloud} |
embassy-phylip | 1 | {cloud,bio} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
- htscodecs | 1 | {covid-19,bio-dev} |
+ htscodecs | 1 | {bio-dev,covid-19} |
kmerresistance | 1 | {bio} |
- libmaus2 | 1 | {covid-19,bio-dev} |
+ libmaus2 | 1 | {bio-dev,covid-19} |
libvistaio | 1 | {imaging-dev} |
murasaki | 1 | {bio} |
ncbi-vdb | 1 | {bio-dev} |
ngs-sdk | 1 | {bio-dev} |
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
- oscar | 1 | {data,practice,tools} |
+ oscar | 1 | {practice,data,tools} |
pbcopper | 1 | {bio-dev} |
pilercr | 1 | {bio} |
q2templates | 1 | {bio} |
sift | 1 | {bio} |
skesa | 1 | {bio} |
srf | 1 | {bio-dev} |
- stringtie | 1 | {bio,covid-19} |
- vienna-rna | 1 | {covid-19,bio} |
+ stringtie | 1 | {covid-19,bio} |
+ vienna-rna | 1 | {bio,covid-19} |
bambamc | 0 | {bio-dev} |
bamkit | 0 | {covid-19,bio} |
bbmap | 0 | {covid-19,bio} |
biojava4-live | 0 | {bio-dev} |
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
- bustools | 0 | {bio,covid-19} |
+ bustools | 0 | {covid-19,bio} |
camp | 0 | {imaging-dev} |
- dextractor | 0 | {bio,covid-19} |
+ concurrentqueue | 0 | {bio-dev} |
+ dextractor | 0 | {covid-19,bio} |
fis-gtm | 0 | {his} |
- intake | 0 | {bio-dev,bio} |
+ intake | 0 | {bio,bio-dev} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbio-mage-utils-perl | 0 | {bio-dev} |
@@ -202,7 +203,7 @@ Last-Update: Sat, 10 Oct 2020 01:42:05 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {covid-19,imaging-dev} |
+ libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
@@ -217,31 +218,32 @@ Last-Update: Sat, 10 Oct 2020 01:42:05 +0000
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {covid-19,bio-dev} |
- nanosv | 0 | {bio,covid-19} |
+ milib | 0 | {bio-dev,covid-19} |
+ nanosv | 0 | {covid-19,bio} |
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
pbseqlib | 0 | {bio-dev} |
- plasmidid | 0 | {bio,covid-19} |
- pplacer | 0 | {covid-19,bio,bio-phylogeny} |
+ pique | 0 | {bio} |
+ plasmidid | 0 | {covid-19,bio} |
+ pplacer | 0 | {bio,bio-phylogeny,covid-19} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
scrappie | 0 | {covid-19,bio} |
seq-gen | 0 | {bio} |
simpleitk | 0 | {imaging-dev} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {bio,covid-19} |
- spaln | 0 | {covid-19,bio} |
+ smrtanalysis | 0 | {covid-19,bio} |
+ spaln | 0 | {bio,covid-19} |
thesias | 0 | {covid-19,bio} |
- tophat-recondition | 0 | {bio,covid-19} |
+ tophat-recondition | 0 | {covid-19,bio} |
varna | 0 | {bio} |
varscan | 0 | {bio,covid-19} |
vtk-dicom | 0 | {imaging-dev} |
- yanagiba | 0 | {bio,covid-19} |
+ yanagiba | 0 | {covid-19,bio} |
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
shovill | -1 | {bio,covid-19} |
sight | -1 | {imaging-dev} |
-(270 rows)
+(272 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/44a622cd8cb28dc80f262466ec752faf629c7456
--
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