[med-svn] [Git][med-team/ncbi-tools6][master] 16 commits: Formally start work on ncbi-tools6 6.1.20170106+dfsg1-9.

Aaron M. Ucko gitlab at salsa.debian.org
Tue Oct 13 03:18:03 BST 2020 


Aaron M. Ucko pushed to branch master at Debian Med / ncbi-tools6


Commits:
ede0e94d by Aaron M. Ucko at 2020-10-12T16:05:26-04:00
Formally start work on ncbi-tools6 6.1.20170106+dfsg1-9.

- - - - -
dd1c441f by Aaron M. Ucko at 2020-10-12T16:06:52-04:00
Add a changelog note for Andreas's d/u/m typo fix (d70cdb79).

- - - - -
1c4a84a4 by Aaron M. Ucko at 2020-10-12T16:31:26-04:00
Trim trailing whitespace.

Changes-By: lintian-brush
Fixes: lintian: trailing-whitespace
See-also: https://lintian.debian.org/tags/trailing-whitespace.html

- - - - -
7cf1ad81 by Aaron M. Ucko at 2020-10-12T16:31:31-04:00
debian/copyright: use spaces rather than tabs to start continuation lines..

Changes-By: lintian-brush
Fixes: lintian: tab-in-license-text
See-also: https://lintian.debian.org/tags/tab-in-license-text.html

- - - - -
788566b3 by Aaron M. Ucko at 2020-10-12T16:31:41-04:00
Use secure URI in Homepage field.

Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html

- - - - -
63b7011d by Aaron M. Ucko at 2020-10-12T16:31:44-04:00
Bump debhelper from old 11 to 12.

Changes-By: lintian-brush
Fixes: lintian: package-uses-old-debhelper-compat-version
See-also: https://lintian.debian.org/tags/package-uses-old-debhelper-compat-version.html

- - - - -
b889590c by Aaron M. Ucko at 2020-10-12T16:31:45-04:00
Set debhelper-compat version in Build-Depends.

Changes-By: lintian-brush
Fixes: lintian: uses-debhelper-compat-file
See-also: https://lintian.debian.org/tags/uses-debhelper-compat-file.html

- - - - -
f2a7595b by Aaron M. Ucko at 2020-10-12T19:35:13-04:00
Move libvibgif.so.6's development files to libncbi6-dev.

Move development files usable with libvibgif.so.6 to libncbi6-dev from
libvibrant6-dev; set Breaks/Replaces accordingly.  (The runtime library
has long been in libncbi6, since it adds no extra dependencies.)

- - - - -
727b48c6 by Aaron M. Ucko at 2020-10-12T21:58:05-04:00
debian/copyright: Clean up spurious trailing content on Files: lines.

Several somehow wound up with trailing colons, and one had a
parenthesized comment, which the spec doesn't allow.

- - - - -
ac55bb4b by Aaron M. Ucko at 2020-10-12T22:00:04-04:00
debian/copyright: Correct the spelling of "downloaded."

- - - - -
d82168d9 by Aaron M. Ucko at 2020-10-12T22:01:07-04:00
debian/*.symbols: Use Build-Depends-Package, missed earlier.

- - - - -
cf22254b by Aaron M. Ucko at 2020-10-12T22:02:38-04:00
ncbi-cn3d.{postinst,prerm}: Supply -e via set, per best practice.

- - - - -
f4676ad5 by Aaron M. Ucko at 2020-10-12T22:05:34-04:00
Update Lintian overrides.

Drop overrides associated with former .menu files, and go ahead and
override custom-compression-in-debian-rules for the ncbi-rrna-data
binary package, which is architecture-independent and benefits from
tuning.

- - - - -
2e4ed508 by Aaron M. Ucko at 2020-10-12T22:07:02-04:00
debian/rules: Use pkg-info.mk rather than raw dpkg-parsechangelog.

- - - - -
0a377a33 by Aaron M. Ucko at 2020-10-12T22:07:38-04:00
debian/watch: Use secure URI.

- - - - -
cc4225e1 by Aaron M. Ucko at 2020-10-12T22:08:57-04:00
Finalize ncbi-tools6 6.1.20170106+dfsg1-9 for unstable.

- - - - -


15 changed files:

- debian/changelog
- − debian/compat
- debian/control
- debian/copyright
- debian/libncbi6-dev.install
- debian/libncbi6.symbols
- debian/libvibrant6-dev.install
- debian/libvibrant6b.symbols
- debian/ncbi-cn3d.postinst
- debian/ncbi-cn3d.prerm
- − debian/ncbi-tools-bin.lintian-overrides
- − debian/ncbi-tools-x11.lintian-overrides
- debian/rules
- + debian/source/lintian-overrides
- debian/watch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,32 @@
+ncbi-tools6 (6.1.20170106+dfsg1-9) unstable; urgency=medium
+
+  [ Andreas Tille ]
+  * debian/upstream/metadata: Fix typo.
+
+  [ Aaron M. Ucko ]
+  * Trim trailing whitespace.
+  * debian/copyright:
+    - Use spaces rather than tabs to start continuation lines.
+    - Clean up spurious trailing content on Files: lines.  (Several somehow
+      wound up with trailing colons, and one had a parenthesized comment,
+      which the spec doesn't allow.)
+    - Correct the spelling of "downloaded."
+  * Use secure URIs in Homepage field and debian/watch.
+  * Bump debhelper from old 11 to 12.
+  * Set debhelper-compat version in Build-Depends.
+  * Move development files usable with libvibgif.so.6 to libncbi6-dev from
+    libvibrant6-dev; set Breaks/Replaces accordingly.  (The runtime library
+    has long been in libncbi6, since it adds no extra dependencies.)
+  * debian/*.symbols: Use Build-Depends-Package, missed earlier.
+  * debian/ncbi-cn3d.{postinst,prerm}: Supply -e via set, per best practice.
+  * Update Lintian overrides: drop overrides associated with former .menu
+    files, and go ahead and override custom-compression-in-debian-rules for
+    the ncbi-rrna-data binary package, which is architecture-independent
+    and benefits from tuning.
+  * debian/rules: Use pkg-info.mk rather than raw dpkg-parsechangelog.
+
+ -- Aaron M. Ucko <ucko at debian.org>  Mon, 12 Oct 2020 22:08:56 -0400
+
 ncbi-tools6 (6.1.20170106+dfsg1-8) unstable; urgency=medium
 
   [ Steffen Moeller ]
@@ -129,7 +158,7 @@ ncbi-tools6 (6.1.20170106-4) unstable; urgency=medium
 ncbi-tools6 (6.1.20170106-3) unstable; urgency=medium
 
   [ Liubov Chuprikova ]
-  * Added autopkgtest for ncbi-tools-bin. 
+  * Added autopkgtest for ncbi-tools-bin.
     Closes: #879619
 
   [ Aaron M. Ucko ]
@@ -220,7 +249,7 @@ ncbi-tools6 (6.1.20160908-1) unstable; urgency=medium
     - Fix typo in name of override_dh_makeshlibs-arch target from #806084.
   * debian/{rules,.gitignore}: Stop generating legacy menu files for
     non-interactive tools (already retired in favor of XDG desktop files
-    for true graphical applications). 
+    for true graphical applications).
   * debian/rules, make/make{demo,net}.unx: Substitute -Wl,--as-needed
     for manual linkage cleanups.
   * demo/tbl2asn.c: Complain about date only if failing for other reasons.
@@ -365,7 +394,7 @@ ncbi-tools6 (6.1.20110713-5) unstable; urgency=low
       -fPIE as necessary.
     - Build ncbi-rrna-data with -Sextreme rather than hacking XZ_OPT.
   * make/makeshlb.unx: Honor externally supplied (hardening) LDFLAGS.
-  
+
  -- Aaron M. Ucko <ucko at debian.org>  Fri, 01 Jun 2012 18:36:37 -0400
 
 ncbi-tools6 (6.1.20110713-4) unstable; urgency=low
@@ -392,7 +421,7 @@ ncbi-tools6 (6.1.20110713-3) unstable; urgency=low
   * debian/rules:
     - Don't try to give libncbi6-dev manpages or menu entries.
     - Compress the giant ncbi-rrna-data package with xz -7e (the sweet spot).
-  
+
  -- Aaron M. Ucko <ucko at debian.org>  Sun, 30 Oct 2011 20:52:57 -0400
 
 ncbi-tools6 (6.1.20110713-2) unstable; urgency=low
@@ -742,7 +771,7 @@ ncbi-tools6 (6.1.20050828-1) unstable; urgency=low
 
   * New upstream release
     - Adds two new programs: sbtedit (in ncbi-tools-x11) and trna2sap
-      (in ncbi-tools-bin).  
+      (in ncbi-tools-bin).
   * Drop obsolete alternative (build-)dependencies on ancient versions of
     xlibs-dev, and silly build-dependency on libglu1-xorg | libglu1c2, and
     resync libvibrant-dev's dependencies properly.
@@ -1277,7 +1306,7 @@ ncbi-tools6 (6.0.2-2.1) unstable; urgency=low
 
 ncbi-tools6 (6.0.2-2) unstable; urgency=low
 
-  * Adopted by new maintainer; closes: #92794, #92796, #92798, #48176 
+  * Adopted by new maintainer; closes: #92794, #92796, #92798, #48176
   * Corrected typo in manpage for formatdb; closes: #38483
   * Removed self-conflict of vibrant-dev; closes: #49712
   * Changed the double installation of the copyright file by ncbi-tools6 and
@@ -1300,7 +1329,7 @@ ncbi-tools6 (6.0.2-1.1) unstable; urgency=low
 
 ncbi-tools6 (6.0.2-1) unstable; urgency=low
 
-  * New upstream release (includes Blast 2.0.8). 
+  * New upstream release (includes Blast 2.0.8).
     Addresses #33451 but does not solve it completely.
   * Manual page. Closes #30227
   * Add the vibrant package
@@ -1334,5 +1363,3 @@ ncbi-tools6 (6.0-1) unstable; urgency=low
   * Initial Release. First public release.
 
  -- Stephane Bortzmeyer <bortzmeyer at debian.org>  Tue, 22 Sep 1998 17:23:12 +0200
-
-


=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11


=====================================
debian/control
=====================================
@@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Aaron M. Ucko <ucko at debian.org>
 Section: libdevel
 Priority: optional
-Build-Depends: debhelper (>= 11~)
+Build-Depends: debhelper-compat (= 12)
 Build-Depends-Arch: csh | c-shell,
                     libglu1-mesa-dev | libglu-dev,
                     libgnutls28-dev | gnutls-dev,
@@ -16,7 +16,7 @@ Build-Depends-Indep: icoutils,
 Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/ncbi-tools6
 Vcs-Git: https://salsa.debian.org/med-team/ncbi-tools6.git
-Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/
+Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/
 Rules-Requires-Root: no
 
 Package: libncbi6
@@ -39,6 +39,8 @@ Depends: libncbi6 (= ${binary:Version}),
          ${misc:Depends}
 Recommends: ncbi-tools-bin
 Provides: ncbi-tools-dev
+Breaks: libvibrant6-dev (<< 6.1.20170106-9~)
+Replaces: libvibrant6-dev (<< 6.1.20170106-9~)
 Description: NCBI libraries for biology applications (development files)
  This package supplies development versions of NCBI's non-graphical C
  libraries, along with the corresponding header files.


=====================================
debian/copyright
=====================================
@@ -21,23 +21,23 @@ Files: connect/mitsock/OTErrno.c connect/mitsock/OTnetdb.c
 Copyright: ???? National Center for Supercomputing Applications
 License: NCSA
 
-Files: connect/mitsock/a_inet.h:
+Files: connect/mitsock/a_inet.h
 Copyright: 1983 Regents of the University of California
 License: BSD-3-Clause
 
-Files: connect/mitsock/carbon_netdb.h:
+Files: connect/mitsock/carbon_netdb.h
 Copyright: 1980, 1983, 1988 Regents of the University of California
 License: BSD-3-Clause
 
-Files: connect/mitsock/neterrno.h:
+Files: connect/mitsock/neterrno.h
 Copyright: 1982, 1986, 1989 Regents of the University of California
 License: BSD-3-Clause
 
-Files: connect/mitsock/neti_in.h:
+Files: connect/mitsock/neti_in.h
 Copyright: 1982, 1986, 1990 Regents of the University of California
 License: BSD-3-Clause
 
-Files: connect/mitsock/s_types.h:
+Files: connect/mitsock/s_types.h
 Copyright: 1982 Regents of the University of California
 License: BSD-3-Clause
 
@@ -57,15 +57,15 @@ Files: debian/*
 Copyright: 1998-1999 Stephane Bortzmeyer <bortzmeyer at pasteur.fr>
            2001      Dr. Guenter Bechly <gbechly at debian.org>
            2001-2019 Aaron M. Ucko <ucko at debian.org>
-	   2012-2019 Andreas Tille <tille at debian.org
-	   2019      Steffen Möller <moeller at debian.org>
+           2012-2019 Andreas Tille <tille at debian.org
+           2019      Steffen Möller <moeller at debian.org>
 License: public_domain
 
-Files: debian/tests/test-data/* (except for trnascan-se_sample.output)
+Files: debian/tests/test-data/*
 Copyright: 1996-2018 NCBI
 License: public_domain
 Comment:
- nc0225.aso.gz and dsRNA_viruses.* can be dowloaded by running:
+ nc0225.aso.gz and dsRNA_viruses.* can be downloaded by running:
     wget ftp://ftp.ncbi.nih.gov/ncbi-asn1/daily-nc/nc0225.aso.gz
     wget ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ASN_BINARY/Viruses/dsRNA_viruses.ags.gz
     wget ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Viruses/dsRNA_viruses.gene_info.gz


=====================================
debian/libncbi6-dev.install
=====================================
@@ -25,6 +25,7 @@ usr/include/ncbi/ctools
 usr/include/ncbi/db_list.h
 usr/include/ncbi/ddvcolor.h
 usr/include/ncbi/dotseq.h
+usr/include/ncbi/drawingp.h
 usr/include/ncbi/dust.h
 usr/include/ncbi/dvncode.h
 usr/include/ncbi/edutil.h
@@ -53,6 +54,7 @@ usr/include/ncbi/macroapi.h
 usr/include/ncbi/mapcn3d.h
 usr/include/ncbi/mapmime.h
 usr/include/ncbi/mapmla.h
+usr/include/ncbi/mappingp.h
 usr/include/ncbi/mapproj.h
 usr/include/ncbi/mappubme.h
 usr/include/ncbi/maputil.h
@@ -67,33 +69,7 @@ usr/include/ncbi/mkbioseq.h
 usr/include/ncbi/mla2api.h
 usr/include/ncbi/mlkludge.h
 usr/include/ncbi/mmdb*.h
-usr/include/ncbi/ncbi.h
-usr/include/ncbi/ncbi_skew_guard.h
-usr/include/ncbi/ncbibs.h
-usr/include/ncbi/ncbienv.h
-usr/include/ncbi/ncbierr.h
-usr/include/ncbi/ncbifile.h
-usr/include/ncbi/ncbilang.h
-usr/include/ncbi/ncbilcl.h
-usr/include/ncbi/ncbimain.h
-usr/include/ncbi/ncbimath.h
-usr/include/ncbi/ncbimem.h
-usr/include/ncbi/ncbimisc.h
-usr/include/ncbi/ncbimsg.h
-usr/include/ncbi/ncbinet.h
-usr/include/ncbi/ncbiopt.h
-usr/include/ncbi/ncbiprop.h
-usr/include/ncbi/ncbisam.h
-usr/include/ncbi/ncbisami.h
-usr/include/ncbi/ncbisgml.h
-usr/include/ncbi/ncbisort.h
-usr/include/ncbi/ncbisrti.h
-usr/include/ncbi/ncbistd.h
-usr/include/ncbi/ncbistr.h
-usr/include/ncbi/ncbithr.h
-usr/include/ncbi/ncbitime.h
-usr/include/ncbi/ncbiwin.h
-usr/include/ncbi/ncbiwww.h
+usr/include/ncbi/ncbi*.h
 usr/include/ncbi/needleman.h
 usr/include/ncbi/netblap3.h
 usr/include/ncbi/netcnfg.h
@@ -105,6 +81,7 @@ usr/include/ncbi/obj*.h
 usr/include/ncbi/parsegb.h
 usr/include/ncbi/pdiagnos.h
 usr/include/ncbi/pgppop.h
+usr/include/ncbi/picture*.h
 usr/include/ncbi/pmfapi.h
 usr/include/ncbi/pobutil.h
 usr/include/ncbi/posit.h
@@ -174,6 +151,14 @@ usr/include/ncbi/valapi.h
 usr/include/ncbi/valid*.h
 usr/include/ncbi/vast*.h
 usr/include/ncbi/vecsc*.h
+usr/include/ncbi/vibdefns.h
+usr/include/ncbi/vibforms.h
+usr/include/ncbi/vibincld.h
+usr/include/ncbi/vibprocs.h
+usr/include/ncbi/vibrant.h
+usr/include/ncbi/vibtypes.h
+usr/include/ncbi/viewer.h
+usr/include/ncbi/viewerp.h
 usr/include/ncbi/viewmgr.h
 usr/include/ncbi/xmlblast.h
 usr/lib/*/libblast*.a
@@ -200,4 +185,6 @@ usr/lib/*/libncbitxc2.a
 usr/lib/*/libncbitxc2.so
 usr/lib/*/libnet*.a
 usr/lib/*/libnet*.so
+usr/lib/*/libvibgif.a
+usr/lib/*/libvibgif.so
 usr/lib/*/ncbithr.o


=====================================
debian/libncbi6.symbols
=====================================
@@ -1,4 +1,5 @@
 libblast.so.6 libncbi6 #MINVER#
+* Build-Depends-Package: libncbi6-dev
  ALIGN_EX at Base 6.1.20040616
  AMINOACID_TO_NCBISTDAA at Base 6.1.20040505
  AdjustSubjectRange at Base 6.1.20040505
@@ -740,6 +741,7 @@ libblast.so.6 libncbi6 #MINVER#
  s_GetSubjectLength at Base 6.1.20160908
  trueCharPositions at Base 6.1.20040616
 libblastapi.so.6 libncbi6 #MINVER#
+* Build-Depends-Package: libncbi6-dev
  BLAST_FormatResults at Base 6.1.20040204
  BLAST_GeneticCodeFind at Base 6.1.20040204
  BLAST_GetQuerySeqLoc at Base 6.1.20040204
@@ -833,6 +835,7 @@ libblastapi.so.6 libncbi6 #MINVER#
  s_SBlastMessageCompare at Base 6.1.20060507
  s_SeqBufferDust at Base 6.1.20070822
 libblastcompadj.so.6 libncbi6 #MINVER#
+* Build-Depends-Package: libncbi6-dev
  BlastCompo_AlignmentNew at Base 6.1.20051206
  BlastCompo_AlignmentsFree at Base 6.1.20051206
  BlastCompo_EarlyTermination at Base 6.1.20051206
@@ -890,9 +893,11 @@ libblastcompadj.so.6 libncbi6 #MINVER#
  Nlm_SolveLtriangPosDef at Base 6.1.20051206
  Nlm_StepBound at Base 6.1.20051206
 libconnssl.so.6 libncbi6 #MINVER#
+* Build-Depends-Package: libncbi6-dev
  NcbiCredGnuTls at Base 6.1.20160908
  NcbiSetupGnuTls at Base 6.1.20160908
 libncbi.so.6 libncbi6 #MINVER#
+* Build-Depends-Package: libncbi6-dev
  AsnAllModPtr at Base 6.1.20030421
  AsnBinBufWrite at Base 6.1.20030421
  AsnBinReadId at Base 6.1.20030421
@@ -2148,6 +2153,7 @@ libncbi.so.6 libncbi6 #MINVER#
  x_json_value_init_object at Base 6.1.20160908
  x_json_value_init_string at Base 6.1.20160908
 libncbiNacc.so.6 libncbi6 #MINVER#
+* Build-Depends-Package: libncbi6-dev
  AccessionToFasta at Base 6.1.20030421
  AdaptiveDocSumMatrix at Base 6.1.20030421
  BiostrucListAsnRead at Base 6.1.20030421
@@ -2382,6 +2388,7 @@ libncbiNacc.so.6 libncbi6 #MINVER#
  TermRespNew at Base 6.1.20030421
  state at Base 6.1.20030421
 libncbicdr.so.6 libncbi6 #MINVER#
+* Build-Depends-Package: libncbi6-dev
  CASN_Close at Base 6.1.20030421
  CASN_DocCount at Base 6.1.20030421
  CASN_DocType at Base 6.1.20030421
@@ -2472,6 +2479,7 @@ libncbicdr.so.6 libncbi6 #MINVER#
  cd3_CdTrmUidsMem at Base 6.1.20030421
  cd3_EntrezInfoOpen at Base 6.1.20030421
 libncbiid1.so.6 libncbi6 #MINVER#
+* Build-Depends-Package: libncbi6-dev
  ID1ArcgGIStateGet at Base 6.1.20030421
  ID1ArchFini at Base 6.1.20030421
  ID1ArchGIGet at Base 6.1.20030421
@@ -2515,6 +2523,7 @@ libncbiid1.so.6 libncbi6 #MINVER#
  id1genAsnLoad at Base 6.1.20030421
  id_print_gi_state at Base 6.1.20030421
 libncbimla.so.6 libncbi6 #MINVER#
+* Build-Depends-Package: libncbi6-dev
  AllUpperCase at Base 6.1.20030421
  FetchPub at Base 6.1.20030421
  FetchPubPmId at Base 6.1.20030421
@@ -2571,6 +2580,7 @@ libncbimla.so.6 libncbi6 #MINVER#
  print_pub at Base 6.1.20030421
  ten_authors at Base 6.1.20030421
 libncbimmdb.so.6 libncbi6 #MINVER#
+* Build-Depends-Package: libncbi6-dev
  AddLineKin at Base 6.1.20030421
  AddPFBSelect at Base 6.1.20030421
  AlgorithmTypeAsnRead at Base 6.1.20031028
@@ -3563,6 +3573,7 @@ libncbimmdb.so.6 libncbi6 #MINVER#
  ttbi at Base 6.1.20030421
  zsc at Base 6.1.20030421
 libncbiobj.so.6 libncbi6 #MINVER#
+* Build-Depends-Package: libncbi6-dev
  A2GBSeqLocReplaceID at Base 6.1.20040204
  AAForCodon at Base 6.1.20030421
  ACCN_1_5_FORMAT at Base 6.1.20030421
@@ -9589,6 +9600,7 @@ libncbiobj.so.6 libncbi6 #MINVER#
  x_ParFlat_GBFeat at Base 6.1.20030421
  x_ParFlat_GBQual_names at Base 6.1.20030421
 libncbitool.so.6 libncbi6 #MINVER#
+* Build-Depends-Package: libncbi6-dev
  A at Base 6.1.20030421
  AA20alpha at Base 6.1.20030421
  ACT_BuildProfile at Base 6.1.20030421
@@ -11126,6 +11138,7 @@ libncbitool.so.6 libncbi6 #MINVER#
  write_sim_output at Base 6.1.20030421
  z_ALIGN at Base 6.1.20030421
 libncbitxc2.so.6 libncbi6 #MINVER#
+* Build-Depends-Package: libncbi6-dev
  CheckTaxId at Base 6.1.20030421
  CloseTaxDB at Base 6.1.20030421
  FDBTaxCallback at Base 6.1.20030421
@@ -11254,6 +11267,7 @@ libncbitxc2.so.6 libncbi6 #MINVER#
  txc_loadNameClasses at Base 6.1.20030421
  txc_loadRanks at Base 6.1.20030421
 libnetblast.so.6 libncbi6 #MINVER#
+* Build-Depends-Package: libncbi6-dev
  BLASTGetUidsFromQuery at Base 6.1.20030421
  Blast3GetDbinfo at Base 6.1.20030421
  Blast3GetMotd at Base 6.1.20030421
@@ -11371,6 +11385,7 @@ libnetblast.so.6 libncbi6 #MINVER#
  objblst3AsnLoad at Base 6.1.20030421
  parametersToOptions at Base 6.1.20030421
 libnetcli.so.6 libncbi6 #MINVER#
+* Build-Depends-Package: libncbi6-dev
  NI_EndServices at Base 6.1.20030421
  NI_GenericGetService at Base 6.1.20030421
  NI_GenericInit at Base 6.1.20030421
@@ -11388,6 +11403,7 @@ libnetcli.so.6 libncbi6 #MINVER#
  x_ni_errtext at Base 6.1.20030421
  x_ni_platform at Base 6.1.20030421
 libvibgif.so.6 libncbi6 #MINVER#
+* Build-Depends-Package: libncbi6-dev
  AddOval at Base 6.1.20030421
  BLACK_COLOR at Base 6.1.20030421
  BLUE_COLOR at Base 6.1.20030421


=====================================
debian/libvibrant6-dev.install
=====================================
@@ -16,7 +16,6 @@ usr/include/ncbi/dlogutil.h
 usr/include/ncbi/document.h
 usr/include/ncbi/dotmatrx.h
 usr/include/ncbi/dotviewer.h
-usr/include/ncbi/drawingp.h
 usr/include/ncbi/drawseq.h
 usr/include/ncbi/entrez*.h
 usr/include/ncbi/fea2seg.h
@@ -32,16 +31,12 @@ usr/include/ncbi/layout.h
 usr/include/ncbi/legend.h
 usr/include/ncbi/macrodlg.h
 usr/include/ncbi/mapgene.h
-usr/include/ncbi/mappingp.h
 usr/include/ncbi/medview.h
 usr/include/ncbi/motif.h
-usr/include/ncbi/ncbidraw.h
-usr/include/ncbi/ncbigif.h
-usr/include/ncbi/ncbiport.h
 usr/include/ncbi/netscape.h
 usr/include/ncbi/odlbox.h
 usr/include/ncbi/panels.h
-usr/include/ncbi/pictur*.h
+usr/include/ncbi/pictur3d.h
 usr/include/ncbi/ppict3d.h
 usr/include/ncbi/prtgene.h
 usr/include/ncbi/pubdesc.h
@@ -70,8 +65,14 @@ usr/include/ncbi/udviewer.h
 usr/include/ncbi/udvseq.h
 usr/include/ncbi/urkgraph.h
 usr/include/ncbi/valdlg.h
-usr/include/ncbi/vib*.h
-usr/include/ncbi/viewer*.h
+usr/include/ncbi/vibfltr.h
+usr/include/ncbi/vibgraph.h
+usr/include/ncbi/vibmain.h
+usr/include/ncbi/vibmouse.h
+usr/include/ncbi/vibpcc.h
+usr/include/ncbi/vibrgb.h
+usr/include/ncbi/vibtree.h
+usr/include/ncbi/viewer3d.h
 usr/include/ncbi/vsm*.h
 usr/lib/*/libddvlib.a
 usr/lib/*/libddvlib.so
@@ -79,8 +80,6 @@ usr/lib/*/libncbicn3d*.a
 usr/lib/*/libncbicn3d*.so
 usr/lib/*/libncbidesk.a
 usr/lib/*/libncbidesk.so
-usr/lib/*/libvibgif.a
-usr/lib/*/libvibgif.so
 usr/lib/*/libvibnet.a
 usr/lib/*/libvibnet.so
 usr/lib/*/libvibrant*.a


=====================================
debian/libvibrant6b.symbols
=====================================
@@ -1,4 +1,5 @@
 libddvlib.so.6 libvibrant6b #MINVER#
+* Build-Depends-Package: libvibrant6-dev
  DDVResetProc at Base 6.1.20060507
  DDV_AdjustDrawingRect at Base 6.1.20060507
  DDV_Blast2Seqs at Base 6.1.20060507
@@ -82,6 +83,7 @@ libddvlib.so.6 libvibrant6b #MINVER#
  szAppName2 at Base 6.1.20060507
  szAppName at Base 6.1.20060507
 libncbicn3dOGL.so.6 libvibrant6b #MINVER#
+* Build-Depends-Package: libvibrant6-dev
  AlgorithmicRendering at Base 6.1.20060507
  AssignDomainAlignedStatus at Base 6.1.20060507
  AssignDomainAlignedStatusForStrucSeqs at Base 6.1.20060507
@@ -252,6 +254,7 @@ libncbicn3dOGL.so.6 libvibrant6b #MINVER#
  iCountItemGet at Base 6.1.20060507
  readErrors at Base 6.1.20060507
 libncbidesk.so.6 libvibrant6b #MINVER#
+* Build-Depends-Package: libvibrant6-dev
  AAComposition at Base 6.1.20060507
  ActOnFeatureReplaceList at Base 6.1.20081116
  AddAppearanceItemToAppearance at Base 6.1.20060507
@@ -1319,6 +1322,7 @@ libncbidesk.so.6 libvibrant6b #MINVER#
  visstring_widths at Base 6.1.20060507
  xmlPageData at Base 6.1.20060507
 libvibnet.so.6 libvibrant6b #MINVER#
+* Build-Depends-Package: libvibrant6-dev
  CreateClearUnusedItem at Base 6.1.20060507
  CreateDocSumForm at Base 6.1.20060507
  CreateEntrezPrefsDialog at Base 6.1.20060507
@@ -1351,6 +1355,7 @@ libvibnet.so.6 libvibrant6b #MINVER#
  UsingDelayedNeighbor at Base 6.1.20060507
  UsingTextQuery at Base 6.1.20060507
 libvibrantOGL.so.6 libvibrant6b #MINVER#
+* Build-Depends-Package: libvibrant6-dev
  AddOval at Base 6.1.20060507
  AppendPalette at Base 6.1.20060507
  AppendTableText at Base 6.1.20060507


=====================================
debian/ncbi-cn3d.postinst
=====================================
@@ -1,4 +1,5 @@
-#!/bin/sh -e
+#!/bin/sh
+set -e
 
 update-alternatives --install \
     /usr/bin/Cn3D Cn3D /usr/bin/Cn3D-3.0 30 \


=====================================
debian/ncbi-cn3d.prerm
=====================================
@@ -1,4 +1,5 @@
-#!/bin/sh -e
+#!/bin/sh
+set -e
 
 update-alternatives --remove Cn3D /usr/bin/Cn3D-3.0
 


=====================================
debian/ncbi-tools-bin.lintian-overrides deleted
=====================================
@@ -1,2 +0,0 @@
-ncbi-tools-bin: menu-icon-missing usr/share/pixmaps/asntool.xpm
-ncbi-tools-bin: menu-icon-missing usr/share/pixmaps/ncbilogo.xpm


=====================================
debian/ncbi-tools-x11.lintian-overrides deleted
=====================================
@@ -1 +0,0 @@
-ncbi-tools-x11: menu-icon-missing usr/share/pixmaps/ncbilogo.xpm


=====================================
debian/rules
=====================================
@@ -1,7 +1,7 @@
 #!/usr/bin/make -f
-DEB_VERSION=$(shell dpkg-parsechangelog | awk '/^Version:/ { print $$2 }')
+include /usr/share/dpkg/pkg-info.mk
 export NCBI_VERSION_FULL=$(DEB_VERSION)
-export NCBI_VERSION=$(word 1, $(subst -, ,$(NCBI_VERSION_FULL)))
+export NCBI_VERSION=$(DEB_VERSION_EPOCH_UPSTREAM)
 export NCBI_VERSION_MAJOR=$(word 1, $(subst ., ,$(NCBI_VERSION)))
 export NCBI_VERSION_MINOR=$(NCBI_VERSION:$(NCBI_VERSION_MAJOR).%=%)
 export NCBI_VERSION_DATE =$(word 3, $(subst ., ,$(NCBI_VERSION)))


=====================================
debian/source/lintian-overrides
=====================================
@@ -0,0 +1 @@
+ncbi-tools6 source: custom-compression-in-debian-rules * -pncbi-rrna-data *


=====================================
debian/watch
=====================================
@@ -1,3 +1,3 @@
 version=4
 opts="passive,uversionmangle=s|^|6.1.|,downloadurlmangle=s/$/ncbi.tar.gz/,dversionmangle=s/\+dfsg1//,repacksuffix=+dfsg1" \
-http://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/ (\d{8}[a-z]*)/
\ No newline at end of file
+https://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/ (\d{8}[a-z]*)/



View it on GitLab: https://salsa.debian.org/med-team/ncbi-tools6/-/compare/d70cdb799dce8463de5df21e5018676250c8b78a...cc4225e1a69834fe50f397a41dafefcec14fd13c

-- 
View it on GitLab: https://salsa.debian.org/med-team/ncbi-tools6/-/compare/d70cdb799dce8463de5df21e5018676250c8b78a...cc4225e1a69834fe50f397a41dafefcec14fd13c
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