[med-svn] [Git][med-team/lastz][master] 3 commits: Really fix build issue

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / lastz


Commits:
9b5de7d3 by Andreas Tille at 2020-10-15T13:11:03+02:00
Really fix build issue

- - - - -
1838e4f1 by Andreas Tille at 2020-10-15T13:16:46+02:00
Fix spelling

- - - - -
55a336e3 by Andreas Tille at 2020-10-15T13:18:24+02:00
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/patches/fix_signed_char.patch
- debian/patches/series
- + debian/patches/spelling.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+lastz (1.04.03-4) unstable; urgency=medium
+
+  * Really fix build issue
+  * Fix spelling
+
+ -- Andreas Tille <tille at debian.org>  Thu, 15 Oct 2020 13:16:55 +0200
+
 lastz (1.04.03-3) unstable; urgency=medium
 
   * Fix Build issue on a couple of architectures


=====================================
debian/patches/fix_signed_char.patch
=====================================
@@ -37,6 +37,15 @@ Last-Update: Thu, 15 Oct 2020 11:02:55 +0200
  			}
  
  		if (ch == '\n')
+@@ -5137,7 +5137,7 @@ static int find_next_general_fasta_coi
+ 				break;								//  .. truncate the header)
+ 			*(s++) = ch;
+ 			ch = seq_getc (_seq);
+-			if (ch == EOF) goto failure;
++			if ((signed char)ch == EOF) goto failure;
+ 			}
+ 		*s = 0;
+ 
 @@ -5231,7 +5231,7 @@ static int find_next_fastq_coi
  		debugNamesFile_14;
  


=====================================
debian/patches/series
=====================================
@@ -1,3 +1,4 @@
 propagate_cflags.patch
 2to3.patch
 fix_signed_char.patch
+spelling.patch


=====================================
debian/patches/spelling.patch
=====================================
@@ -0,0 +1,35 @@
+Description: Fix spelling
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Thu, 15 Oct 2020 11:02:55 +0200
+
+--- a/src/dna_utilities.c
++++ b/src/dna_utilities.c
+@@ -1147,7 +1147,7 @@ exscoreset* read_score_set
+ 
+ 	if ((xss->ss.gapOpenSet) && (xss->ss.gapOpen + xss->ss.gapExtend <= 0))
+ 		suicidef (" (in %s) "scoreFmt " is not a valid gap open penalty with extension penalty " scoreFmt "\n"
+-		          "(open can be negative but the sum has to be postive)\n",
++		          "(open can be negative but the sum has to be positive)\n",
+ 		          name, xss->ss.gapOpen, xss->ss.gapExtend);
+ 	if ((xss->ss.gapExtendSet) && (xss->ss.gapExtend < 0))
+ 		suicidef (scoreFmt " is not a valid gap extension penalty (in %s)\n",
+--- a/src/lastz.c
++++ b/src/lastz.c
+@@ -4870,7 +4870,7 @@ static void format_options (void)
+ 	fprintf (helpout, "there may be a question as to whether or not lastz completed successfully.  The\n");
+ 	fprintf (helpout, "line \"# lastz end-of-file\" is written to output as the last line.  Note that\n");
+ 	fprintf (helpout, "in some formats this is *not* a legal line;  the user must remove it before any\n");
+-	fprintf (helpout, "downstream processsing.\n");
++	fprintf (helpout, "downstream processing.\n");
+ 
+ 	exit (EXIT_FAILURE);
+ 	}
+@@ -8724,7 +8724,7 @@ static void parse_options
+ 
+ 		if ((haveGapOpen) && (gapOpen + gapExtend <= 0))
+ 			chastise ("%s is not a valid gap open penalty with extension penalty %s\n"
+-			          "(open can be negative but the sum has to be postive)\n",
++			          "(open can be negative but the sum has to be positive)\n",
+ 			          gapOpenStr, gapExtendStr);
+ 		if ((haveGapExtend) && (gapExtend < 0))
+ 			chastise ("%s is not a valid gap extension penalty\n", gapExtendStr);



View it on GitLab: https://salsa.debian.org/med-team/lastz/-/compare/7316de81a885b021583c0c4819b7194177d8a3ac...55a336e3d4bac66191649084d117cb71346c5c8b

-- 
View it on GitLab: https://salsa.debian.org/med-team/lastz/-/compare/7316de81a885b021583c0c4819b7194177d8a3ac...55a336e3d4bac66191649084d117cb71346c5c8b
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