Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
d746919a by Andreas Tille at 2020-10-16T13:45:18+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,59 +1,61 @@
-Last-Update: Fri, 16 Oct 2020 01:42:03 +0000
+Last-Update: Fri, 16 Oct 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 172 | {imaging,covid-19} |
- orthanc | 90 | {practice,imaging,covid-19} |
- orthanc-wsi | 48 | {oncology,his,laboratory,practice,imaging,covid-19} |
+ dcmtk | 176 | {imaging,covid-19} |
+ orthanc | 91 | {practice,imaging,covid-19} |
+ orthanc-wsi | 49 | {oncology,his,laboratory,practice,imaging,covid-19} |
gdcm | 40 | {imaging-dev} |
dicom3tools | 33 | {imaging} |
- dicomscope | 27 | {imaging} |
- htsjdk | 27 | {bio-dev} |
+ dicomscope | 29 | {imaging} |
+ htsjdk | 28 | {bio-dev} |
dcm2niix | 21 | {imaging} |
- gdcm | 18 | {imaging,covid-19} |
- gdcm | 18 | {imaging-dev} |
+ gdcm | 20 | {imaging,covid-19} |
+ gdcm | 19 | {imaging-dev} |
gnumed-server | 17 | {covid-19,practice} |
invesalius | 17 | {imaging} |
- ngs-sdk | 16 | {bio-dev} |
+ ngs-sdk | 17 | {bio-dev} |
minc-tools | 14 | {imaging} |
biosig4c++ | 13 | {imaging,physics} |
- pixelmed | 13 | {imaging} |
- insighttoolkit4 | 12 | {imaging-dev} |
- nifticlib | 12 | {imaging} |
- nifticlib | 12 | {imaging-dev} |
- adun.app | 11 | {bio} |
+ insighttoolkit4 | 13 | {imaging-dev} |
+ nifticlib | 13 | {imaging-dev} |
+ adun.app | 12 | {bio} |
+ pixelmed | 12 | {imaging} |
plastimatch | 11 | {imaging} |
melting | 10 | {cloud,bio} |
ngs-sdk | 10 | {bio-dev} |
+ nifticlib | 10 | {imaging} |
openslide | 10 | {imaging} |
vtk-dicom | 10 | {imaging} |
librg-utils-perl | 9 | {bio} |
biojava-live | 8 | {bio-dev} |
+ jebl2 | 8 | {bio-dev} |
king | 8 | {imaging,typesetting} |
anfo | 7 | {cloud,bio} |
bart-view | 7 | {imaging} |
+ dicompyler | 7 | {oncology} |
fastlink | 7 | {cloud,bio} |
- jebl2 | 7 | {bio-dev} |
obitools | 7 | {bio} |
orthanc-webviewer | 7 | {imaging} |
- phyutility | 7 | {cloud,bio} |
- salmon | 7 | {bio,covid-19} |
sibsim4 | 7 | {bio,cloud} |
- stacks | 7 | {bio} |
- dicompyler | 6 | {oncology} |
ea-utils | 6 | {bio} |
embassy-domalign | 6 | {bio,cloud} |
+ embassy-domsearch | 6 | {bio,cloud} |
gatb-core | 6 | {bio} |
mipe | 6 | {cloud,bio} |
multiqc | 6 | {bio,covid-19} |
+ phyutility | 6 | {cloud,bio} |
pymia | 6 | {imaging-dev} |
+ salmon | 6 | {bio,covid-19} |
+ spread-phy | 6 | {bio-phylogeny,bio} |
+ stacks | 6 | {bio} |
staden | 6 | {bio} |
+ beast-mcmc | 5 | {bio,bio-phylogeny} |
biomaj3-cli | 5 | {cloud} |
brig | 5 | {bio} |
ecopcr | 5 | {bio} |
elastix | 5 | {imaging} |
embassy-domainatrix | 5 | {bio,cloud} |
- embassy-domsearch | 5 | {bio,cloud} |
jellyfish1 | 5 | {bio} |
lagan | 5 | {bio} |
libdivsufsort | 5 | {bio-dev} |
@@ -61,23 +63,20 @@ Last-Update: Fri, 16 Oct 2020 01:42:03 +0000
orthanc-dicomweb | 5 | {imaging,covid-19} |
paraclu | 5 | {cloud,bio} |
perm | 5 | {cloud,bio} |
- piler | 5 | {bio} |
- placnet | 5 | {bio} |
predictprotein | 5 | {bio} |
saint | 5 | {bio} |
- spread-phy | 5 | {bio-phylogeny,bio} |
treeview | 5 | {bio-phylogeny,bio} |
alter-sequence-alignment | 4 | {bio} |
arden | 4 | {bio,cloud} |
assemblytics | 4 | {bio} |
- beast-mcmc | 4 | {bio,bio-phylogeny} |
clonalorigin | 4 | {bio} |
+ delly | 4 | {covid-19,bio} |
dindel | 4 | {bio} |
estscan | 4 | {bio} |
fastml | 4 | {bio} |
- fsm-lite | 4 | {bio} |
ghmm | 4 | {bio} |
ipig | 4 | {bio} |
+ libminc | 4 | {imaging-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
libsbml | 4 | {bio-dev} |
mauve-aligner | 4 | {bio} |
@@ -86,68 +85,68 @@ Last-Update: Fri, 16 Oct 2020 01:42:03 +0000
neobio | 4 | {bio,cloud} |
phast | 4 | {bio} |
phybin | 4 | {bio} |
+ piler | 4 | {bio} |
+ placnet | 4 | {bio} |
+ prime-phylo | 4 | {cloud,bio} |
proalign | 4 | {bio,bio-phylogeny} |
radiant | 4 | {bio} |
rdp-classifier | 4 | {bio} |
- rtax | 4 | {bio,cloud} |
scrm | 4 | {bio} |
+ soapsnp | 4 | {bio} |
spaced | 4 | {bio} |
sprai | 4 | {bio} |
- suitename | 4 | {bio} |
tracetuner | 4 | {bio} |
- yaha | 4 | {bio} |
zalign | 4 | {bio,cloud} |
biomaj3-daemon | 3 | {bio} |
bitseq | 3 | {bio} |
- clonalframeml | 3 | {bio,covid-19} |
- delly | 3 | {covid-19,bio} |
+ fsm-lite | 3 | {bio} |
getdata | 3 | {bio} |
hinge | 3 | {bio} |
jmodeltest | 3 | {bio,bio-phylogeny} |
lamarc | 3 | {bio} |
- libminc | 3 | {imaging-dev} |
libpal-java | 3 | {bio-dev} |
metaphlan2 | 3 | {bio} |
mrs | 3 | {bio} |
+ murasaki | 3 | {bio} |
nutsqlite | 3 | {tools} |
orthanc-postgresql | 3 | {imaging} |
- plasmidseeker | 3 | {bio} |
- prime-phylo | 3 | {cloud,bio} |
+ pbdagcon | 3 | {bio} |
prottest | 3 | {bio-phylogeny,bio} |
- pscan-chip | 3 | {bio} |
quorum | 3 | {bio} |
rambo-k | 3 | {bio} |
rdp-alignment | 3 | {bio} |
- runcircos-gui | 3 | {bio} |
+ rtax | 3 | {bio,cloud} |
samblaster | 3 | {bio,covid-19} |
segemehl | 3 | {bio} |
sga | 3 | {bio} |
sight | 3 | {imaging} |
- soapaligner | 3 | {bio} |
- soapsnp | 3 | {bio} |
+ suitename | 3 | {bio} |
surankco | 3 | {bio} |
tvc | 3 | {bio} |
+ yaha | 3 | {bio} |
+ acedb | 2 | {bio,cloud} |
bio-tradis | 2 | {bio,bio-dev} |
blasr | 2 | {bio-ngs,bio} |
busco | 2 | {covid-19,bio} |
+ clonalframeml | 2 | {bio,covid-19} |
emboss-explorer | 2 | {bio} |
logol | 2 | {bio} |
- murasaki | 2 | {bio} |
opencfu | 2 | {laboratory} |
openslide | 2 | {imaging-dev} |
orthanc-mysql | 2 | {imaging} |
papyrus | 2 | {imaging-dev} |
- pbdagcon | 2 | {bio} |
+ plasmidseeker | 2 | {bio} |
+ pscan-chip | 2 | {bio} |
qcumber | 2 | {bio} |
+ runcircos-gui | 2 | {bio} |
samtools-legacy | 2 | {bio-dev} |
seqan | 2 | {bio-dev} |
seqsero | 2 | {bio} |
simpleitk | 2 | {imaging-dev} |
+ soapaligner | 2 | {bio} |
trace2dbest | 2 | {bio} |
- acedb | 1 | {bio,cloud} |
- atropos | 1 | {bio} |
- biosig4c++ | 1 | {imaging-dev,physics} |
biosig4c++ | 1 | {physics,imaging-dev} |
+ biosig4c++ | 1 | {imaging-dev,physics} |
blimps | 1 | {bio} |
canu | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
@@ -157,7 +156,6 @@ Last-Update: Fri, 16 Oct 2020 01:42:03 +0000
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
htscodecs | 1 | {bio-dev,covid-19} |
- kmerresistance | 1 | {bio} |
libctapimkt | 1 | {practice} |
libmaus2 | 1 | {bio-dev,covid-19} |
libvistaio | 1 | {imaging-dev} |
@@ -170,10 +168,10 @@ Last-Update: Fri, 16 Oct 2020 01:42:03 +0000
pilercr | 1 | {bio} |
q2templates | 1 | {bio} |
sift | 1 | {bio} |
- skesa | 1 | {bio} |
srf | 1 | {bio-dev} |
stringtie | 1 | {covid-19,bio} |
vienna-rna | 1 | {bio,covid-19} |
+ atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
bamkit | 0 | {covid-19,bio} |
bbmap | 0 | {covid-19,bio} |
@@ -187,6 +185,7 @@ Last-Update: Fri, 16 Oct 2020 01:42:03 +0000
dextractor | 0 | {covid-19,bio} |
fis-gtm | 0 | {his} |
intake | 0 | {bio,bio-dev} |
+ kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbio-mage-utils-perl | 0 | {bio-dev} |
@@ -233,6 +232,7 @@ Last-Update: Fri, 16 Oct 2020 01:42:03 +0000
seq-gen | 0 | {bio} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
+ skesa | 0 | {bio} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {covid-19,bio} |
spaln | 0 | {bio,covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d746919a183477cf9d0f65698cd9126deb348d51
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d746919a183477cf9d0f65698cd9126deb348d51
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20201016/fb218565/attachment-0001.html>