[med-svn] [Git][med-team/last-align][upstream] New upstream version 1133

[Nilesh Patra]

Nilesh Patra pushed to branch upstream at Debian Med / last-align


Commits:
c9d42e75 by Nilesh Patra at 2020-10-17T13:16:16+05:30
New upstream version 1133
- - - - -


30 changed files:

- ChangeLog.txt
- scripts/last-dotplot
- src/Alignment.cc
- src/Alignment.hh
- src/AlignmentWrite.cc
- src/CyclicSubsetSeed.cc
- src/CyclicSubsetSeed.hh
- src/GappedXdropAligner.cc
- src/GappedXdropAligner.hh
- src/GappedXdropAligner2qual.cc
- + src/GappedXdropAlignerFrame.cc
- src/GappedXdropAlignerInl.hh
- src/GappedXdropAlignerPssm.cc
- src/GeneticCode.cc
- src/GeneticCode.hh
- src/LastEvaluer.cc
- src/LastEvaluer.hh
- src/LastalArguments.cc
- src/LastalArguments.hh
- src/ScoreMatrix.cc
- src/ScoreMatrix.hh
- src/ScoreMatrixRow.hh
- src/SegmentPair.cc
- src/SegmentPair.hh
- src/SubsetSuffixArraySearch.cc
- src/lastal.cc
- src/makefile
- src/mcf_gap_costs.cc
- src/mcf_gap_costs.hh
- src/mcf_substitution_matrix_stats.cc


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/last-align/-/commit/c9d42e75ce7ce339def7b66acec4b81d0876b429

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View it on GitLab: https://salsa.debian.org/med-team/last-align/-/commit/c9d42e75ce7ce339def7b66acec4b81d0876b429
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