Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
3a4cbd20 by Andreas Tille at 2020-10-19T13:45:08+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,188 +1,185 @@
-Last-Update: Mon, 19 Oct 2020 01:42:04 +0000
+Last-Update: Mon, 19 Oct 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 180 | {imaging,covid-19} |
+ dcmtk | 176 | {covid-19,imaging} |
orthanc | 95 | {practice,imaging,covid-19} |
- orthanc-wsi | 49 | {oncology,his,laboratory,practice,imaging,covid-19} |
+ orthanc-wsi | 48 | {practice,covid-19,his,oncology,imaging,laboratory} |
gdcm | 40 | {imaging-dev} |
dicom3tools | 33 | {imaging} |
- htsjdk | 31 | {bio-dev} |
- dicomscope | 29 | {imaging} |
- dcm2niix | 21 | {imaging} |
+ dicomscope | 30 | {imaging} |
+ htsjdk | 28 | {bio-dev} |
+ dcm2niix | 20 | {imaging} |
gdcm | 20 | {imaging,covid-19} |
- gdcm | 18 | {imaging-dev} |
- ngs-sdk | 18 | {bio-dev} |
- gnumed-server | 17 | {covid-19,practice} |
- invesalius | 16 | {imaging} |
- nifticlib | 15 | {imaging-dev} |
- biosig | 14 | {imaging,physics} |
- insighttoolkit4 | 14 | {imaging-dev} |
+ gnumed-server | 18 | {practice,covid-19} |
+ gdcm | 17 | {imaging-dev} |
+ ngs-sdk | 17 | {bio-dev} |
+ invesalius | 15 | {imaging} |
minc-tools | 14 | {imaging} |
+ nifticlib | 13 | {imaging-dev} |
pixelmed | 13 | {imaging} |
- adun.app | 12 | {bio} |
+ biosig | 12 | {imaging,physics} |
+ insighttoolkit4 | 11 | {imaging-dev} |
nifticlib | 11 | {imaging} |
- plastimatch | 11 | {imaging} |
- melting | 10 | {cloud,bio} |
+ adun.app | 10 | {bio} |
ngs-sdk | 10 | {bio-dev} |
openslide | 10 | {imaging} |
+ plastimatch | 10 | {imaging} |
vtk-dicom | 10 | {imaging} |
- librg-utils-perl | 9 | {bio} |
- biojava-live | 8 | {bio-dev} |
- dicompyler | 8 | {oncology} |
- jebl2 | 8 | {bio-dev} |
king | 8 | {imaging,typesetting} |
- anfo | 7 | {cloud,bio} |
- bart-view | 7 | {imaging} |
- fastlink | 7 | {cloud,bio} |
- obitools | 7 | {bio} |
+ melting | 8 | {bio,cloud} |
+ obitools | 8 | {bio} |
+ dicompyler | 7 | {oncology} |
+ librg-utils-perl | 7 | {bio} |
orthanc-webviewer | 7 | {imaging} |
- sibsim4 | 7 | {bio,cloud} |
- staden | 7 | {bio} |
+ bart-view | 6 | {imaging} |
+ biojava-live | 6 | {bio-dev} |
ea-utils | 6 | {bio} |
- embassy-domalign | 6 | {bio,cloud} |
- embassy-domsearch | 6 | {bio,cloud} |
- gatb-core | 6 | {bio} |
- mipe | 6 | {cloud,bio} |
- multiqc | 6 | {bio,covid-19} |
- phyutility | 6 | {cloud,bio} |
- salmon | 6 | {bio,covid-19} |
- spread-phy | 6 | {bio-phylogeny,bio} |
- stacks | 6 | {bio} |
- alter-sequence-alignment | 5 | {bio} |
- beast-mcmc | 5 | {bio,bio-phylogeny} |
+ jebl2 | 6 | {bio-dev} |
+ multiqc | 6 | {covid-19,bio} |
+ staden | 6 | {bio} |
+ anfo | 5 | {bio,cloud} |
biomaj3-cli | 5 | {cloud} |
- brig | 5 | {bio} |
- ecopcr | 5 | {bio} |
- elastix | 5 | {imaging} |
- embassy-domainatrix | 5 | {bio,cloud} |
- jellyfish1 | 5 | {bio} |
- lagan | 5 | {bio} |
+ fastlink | 5 | {cloud,bio} |
libdivsufsort | 5 | {bio-dev} |
- libncl | 5 | {bio} |
libsbml | 5 | {bio-dev} |
- orthanc-dicomweb | 5 | {imaging,covid-19} |
- paraclu | 5 | {cloud,bio} |
- perm | 5 | {cloud,bio} |
- predictprotein | 5 | {bio} |
+ orthanc-dicomweb | 5 | {covid-19,imaging} |
pymia | 5 | {imaging-dev} |
- saint | 5 | {bio} |
- treeview | 5 | {bio-phylogeny,bio} |
- arden | 4 | {bio,cloud} |
- assemblytics | 4 | {bio} |
- clonalorigin | 4 | {bio} |
- delly | 4 | {covid-19,bio} |
- dindel | 4 | {bio} |
- estscan | 4 | {bio} |
- fastml | 4 | {bio} |
- ghmm | 4 | {bio} |
- ipig | 4 | {bio} |
+ sibsim4 | 5 | {bio,cloud} |
+ elastix | 4 | {imaging} |
+ embassy-domalign | 4 | {cloud,bio} |
+ embassy-domsearch | 4 | {cloud,bio} |
+ lagan | 4 | {bio} |
libminc | 4 | {imaging-dev} |
- librdp-taxonomy-tree-java | 4 | {bio-dev} |
- mauve-aligner | 4 | {bio} |
- mhap | 4 | {bio,bio-ngs} |
- microbegps | 4 | {bio} |
- neobio | 4 | {bio,cloud} |
- phast | 4 | {bio} |
- phybin | 4 | {bio} |
- piler | 4 | {bio} |
- placnet | 4 | {bio} |
- prime-phylo | 4 | {cloud,bio} |
- proalign | 4 | {bio,bio-phylogeny} |
- radiant | 4 | {bio} |
- rambo-k | 4 | {bio} |
- rdp-classifier | 4 | {bio} |
- scrm | 4 | {bio} |
- soapsnp | 4 | {bio} |
- spaced | 4 | {bio} |
- sprai | 4 | {bio} |
- tracetuner | 4 | {bio} |
- zalign | 4 | {bio,cloud} |
+ mipe | 4 | {cloud,bio} |
+ phyutility | 4 | {cloud,bio} |
+ predictprotein | 4 | {bio} |
+ salmon | 4 | {bio,covid-19} |
+ spread-phy | 4 | {bio,bio-phylogeny} |
+ stacks | 4 | {bio} |
+ alter-sequence-alignment | 3 | {bio} |
+ assemblytics | 3 | {bio} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
biomaj3-daemon | 3 | {bio} |
- bitseq | 3 | {bio} |
- fsm-lite | 3 | {bio} |
- getdata | 3 | {bio} |
- hinge | 3 | {bio} |
- jmodeltest | 3 | {bio,bio-phylogeny} |
- lamarc | 3 | {bio} |
- libpal-java | 3 | {bio-dev} |
- metaphlan2 | 3 | {bio} |
+ brig | 3 | {bio} |
+ clonalorigin | 3 | {bio} |
+ delly | 3 | {covid-19,bio} |
+ ecopcr | 3 | {bio} |
+ embassy-domainatrix | 3 | {bio,cloud} |
+ estscan | 3 | {bio} |
+ gatb-core | 3 | {bio} |
+ ghmm | 3 | {bio} |
+ jellyfish1 | 3 | {bio} |
+ libncl | 3 | {bio} |
+ mauve-aligner | 3 | {bio} |
mrs | 3 | {bio} |
- murasaki | 3 | {bio} |
- nutsqlite | 3 | {tools} |
orthanc-postgresql | 3 | {imaging} |
papyrus | 3 | {imaging-dev} |
- pbdagcon | 3 | {bio} |
- prottest | 3 | {bio-phylogeny,bio} |
- quorum | 3 | {bio} |
- rdp-alignment | 3 | {bio} |
- rtax | 3 | {bio,cloud} |
- samblaster | 3 | {bio,covid-19} |
- segemehl | 3 | {bio} |
+ paraclu | 3 | {cloud,bio} |
+ perm | 3 | {cloud,bio} |
+ phast | 3 | {bio} |
+ radiant | 3 | {bio} |
+ saint | 3 | {bio} |
seqsero | 3 | {bio} |
- sga | 3 | {bio} |
sight | 3 | {imaging} |
- suitename | 3 | {bio} |
- surankco | 3 | {bio} |
- tvc | 3 | {bio} |
- yaha | 3 | {bio} |
+ soapsnp | 3 | {bio} |
+ tracetuner | 3 | {bio} |
+ treeview | 3 | {bio,bio-phylogeny} |
acedb | 2 | {bio,cloud} |
- bio-tradis | 2 | {bio,bio-dev} |
- blasr | 2 | {bio-ngs,bio} |
- busco | 2 | {covid-19,bio} |
- clonalframeml | 2 | {bio,covid-19} |
- ctn | 2 | {imaging-dev} |
- emboss-explorer | 2 | {bio} |
- logol | 2 | {bio} |
+ arden | 2 | {bio,cloud} |
+ bio-tradis | 2 | {bio-dev,bio} |
+ bitseq | 2 | {bio} |
+ busco | 2 | {bio,covid-19} |
+ dindel | 2 | {bio} |
+ fastml | 2 | {bio} |
+ getdata | 2 | {bio} |
+ hinge | 2 | {bio} |
+ ipig | 2 | {bio} |
+ lamarc | 2 | {bio} |
+ librdp-taxonomy-tree-java | 2 | {bio-dev} |
+ mhap | 2 | {bio,bio-ngs} |
+ microbegps | 2 | {bio} |
+ murasaki | 2 | {bio} |
+ neobio | 2 | {bio,cloud} |
ngs-sdk | 2 | {bio-dev} |
+ nutsqlite | 2 | {tools} |
openslide | 2 | {imaging-dev} |
orthanc-mysql | 2 | {imaging} |
- oscar | 2 | {practice,data,tools} |
- plasmidseeker | 2 | {bio} |
- pscan-chip | 2 | {bio} |
- qcumber | 2 | {bio} |
- runcircos-gui | 2 | {bio} |
+ oscar | 2 | {data,practice,tools} |
+ phybin | 2 | {bio} |
+ piler | 2 | {bio} |
+ placnet | 2 | {bio} |
+ prime-phylo | 2 | {cloud,bio} |
+ proalign | 2 | {bio,bio-phylogeny} |
+ quorum | 2 | {bio} |
+ rambo-k | 2 | {bio} |
+ rdp-alignment | 2 | {bio} |
+ rdp-classifier | 2 | {bio} |
+ samblaster | 2 | {bio,covid-19} |
samtools-legacy | 2 | {bio-dev} |
+ scrm | 2 | {bio} |
+ segemehl | 2 | {bio} |
seqan | 2 | {bio-dev} |
- simpleitk | 2 | {imaging-dev} |
- soapaligner | 2 | {bio} |
- trace2dbest | 2 | {bio} |
+ spaced | 2 | {bio} |
+ sprai | 2 | {bio} |
+ surankco | 2 | {bio} |
+ tvc | 2 | {bio} |
+ yaha | 2 | {bio} |
+ zalign | 2 | {bio,cloud} |
bamkit | 1 | {covid-19,bio} |
biosig | 1 | {physics,imaging-dev} |
- biosig | 1 | {imaging-dev,physics} |
blimps | 1 | {bio} |
canu | 1 | {bio} |
- cat-bat | 1 | {covid-19,bio} |
+ cat-bat | 1 | {bio,covid-19} |
+ clonalframeml | 1 | {covid-19,bio} |
conda-package-handling | 1 | {bio,bio-dev} |
- embassy-phylip | 1 | {cloud,bio} |
+ ctn | 1 | {imaging-dev} |
+ embassy-phylip | 1 | {bio,cloud} |
emmax | 1 | {bio} |
+ fsm-lite | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
htscodecs | 1 | {bio-dev,covid-19} |
+ jmodeltest | 1 | {bio,bio-phylogeny} |
libctapimkt | 1 | {practice} |
libmaus2 | 1 | {bio-dev,covid-19} |
+ libpal-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- murasaki | 1 | {bio} |
+ logol | 1 | {bio} |
+ metaphlan2 | 1 | {bio} |
ncbi-vdb | 1 | {bio-dev} |
- opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
pbcopper | 1 | {bio-dev} |
+ pbdagcon | 1 | {bio} |
pilercr | 1 | {bio} |
+ plasmidseeker | 1 | {bio} |
+ prottest | 1 | {bio-phylogeny,bio} |
+ pscan-chip | 1 | {bio} |
q2templates | 1 | {bio} |
+ qcumber | 1 | {bio} |
+ rtax | 1 | {bio,cloud} |
+ runcircos-gui | 1 | {bio} |
+ sga | 1 | {bio} |
sift | 1 | {bio} |
+ simpleitk | 1 | {imaging-dev} |
+ soapaligner | 1 | {bio} |
srf | 1 | {bio-dev} |
stringtie | 1 | {covid-19,bio} |
- vienna-rna | 1 | {bio,covid-19} |
+ suitename | 1 | {bio} |
+ trace2dbest | 1 | {bio} |
+ vienna-rna | 1 | {covid-19,bio} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
- bbmap | 0 | {covid-19,bio} |
+ bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
biosig | 0 | {physics} |
biosyntax | 0 | {bio} |
- bustools | 0 | {covid-19,bio} |
+ blasr | 0 | {bio,bio-ngs} |
+ bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
concurrentqueue | 0 | {bio-dev} |
cufflinks | 0 | {bio,cloud} |
dextractor | 0 | {covid-19,bio} |
+ emboss-explorer | 0 | {bio} |
fis-gtm | 0 | {his} |
intake | 0 | {bio,bio-dev} |
kmerresistance | 0 | {bio} |
@@ -217,9 +214,11 @@ Last-Update: Mon, 19 Oct 2020 01:42:04 +0000
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {bio-dev,covid-19} |
- nanosv | 0 | {covid-19,bio} |
+ milib | 0 | {covid-19,bio-dev} |
+ murasaki | 0 | {bio} |
+ nanosv | 0 | {bio,covid-19} |
nifticlib | 0 | {imaging-dev} |
+ opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
pbseqlib | 0 | {bio-dev} |
@@ -234,16 +233,16 @@ Last-Update: Mon, 19 Oct 2020 01:42:04 +0000
simpleitk | 0 | {imaging-dev} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {covid-19,bio} |
+ smrtanalysis | 0 | {bio,covid-19} |
spaln | 0 | {bio,covid-19} |
thesias | 0 | {covid-19,bio} |
- tophat-recondition | 0 | {covid-19,bio} |
+ tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
- varscan | 0 | {bio,covid-19} |
+ varscan | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
yanagiba | 0 | {covid-19,bio} |
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
shovill | -1 | {bio,covid-19} |
-(272 rows)
+(271 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3a4cbd20c2e171d5d4dd8beb755ac48f01eb44d8
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