Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
e634f5eb by Andreas Tille at 2020-10-20T13:45:11+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Tue, 20 Oct 2020 01:42:04 +0000
+Last-Update: Tue, 20 Oct 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
@@ -6,57 +6,55 @@ Last-Update: Tue, 20 Oct 2020 01:42:04 +0000
orthanc | 95 | {practice,imaging,covid-19} |
orthanc-wsi | 48 | {practice,covid-19,his,oncology,imaging,laboratory} |
gdcm | 40 | {imaging-dev} |
- dicom3tools | 33 | {imaging} |
- dicomscope | 30 | {imaging} |
+ dicom3tools | 32 | {imaging} |
+ dicomscope | 29 | {imaging} |
htsjdk | 28 | {bio-dev} |
dcm2niix | 20 | {imaging} |
gdcm | 20 | {imaging,covid-19} |
gnumed-server | 18 | {practice,covid-19} |
- gdcm | 17 | {imaging-dev} |
- ngs-sdk | 17 | {bio-dev} |
- invesalius | 15 | {imaging} |
+ gdcm | 16 | {imaging-dev} |
+ ngs-sdk | 16 | {bio-dev} |
+ invesalius | 14 | {imaging} |
minc-tools | 14 | {imaging} |
- nifticlib | 13 | {imaging-dev} |
+ biosig | 13 | {imaging,physics} |
pixelmed | 13 | {imaging} |
- biosig | 12 | {imaging,physics} |
- insighttoolkit4 | 11 | {imaging-dev} |
- nifticlib | 11 | {imaging} |
+ nifticlib | 12 | {imaging-dev} |
+ nifticlib | 12 | {imaging} |
adun.app | 10 | {bio} |
+ insighttoolkit4 | 10 | {imaging-dev} |
ngs-sdk | 10 | {bio-dev} |
- openslide | 10 | {imaging} |
plastimatch | 10 | {imaging} |
vtk-dicom | 10 | {imaging} |
+ openslide | 9 | {imaging} |
king | 8 | {imaging,typesetting} |
- melting | 8 | {bio,cloud} |
obitools | 8 | {bio} |
dicompyler | 7 | {oncology} |
librg-utils-perl | 7 | {bio} |
+ melting | 7 | {bio,cloud} |
orthanc-webviewer | 7 | {imaging} |
bart-view | 6 | {imaging} |
- biojava-live | 6 | {bio-dev} |
ea-utils | 6 | {bio} |
- jebl2 | 6 | {bio-dev} |
multiqc | 6 | {covid-19,bio} |
- staden | 6 | {bio} |
- anfo | 5 | {bio,cloud} |
+ biojava-live | 5 | {bio-dev} |
biomaj3-cli | 5 | {cloud} |
- fastlink | 5 | {cloud,bio} |
+ elastix | 5 | {imaging} |
+ jebl2 | 5 | {bio-dev} |
libdivsufsort | 5 | {bio-dev} |
libsbml | 5 | {bio-dev} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
pymia | 5 | {imaging-dev} |
- sibsim4 | 5 | {bio,cloud} |
- elastix | 4 | {imaging} |
- embassy-domalign | 4 | {cloud,bio} |
- embassy-domsearch | 4 | {cloud,bio} |
+ salmon | 5 | {bio,covid-19} |
+ stacks | 5 | {bio} |
+ staden | 5 | {bio} |
+ anfo | 4 | {bio,cloud} |
+ fastlink | 4 | {cloud,bio} |
lagan | 4 | {bio} |
libminc | 4 | {imaging-dev} |
mipe | 4 | {cloud,bio} |
phyutility | 4 | {cloud,bio} |
predictprotein | 4 | {bio} |
- salmon | 4 | {bio,covid-19} |
- spread-phy | 4 | {bio,bio-phylogeny} |
- stacks | 4 | {bio} |
+ seqsero | 4 | {bio} |
+ sibsim4 | 4 | {bio,cloud} |
alter-sequence-alignment | 3 | {bio} |
assemblytics | 3 | {bio} |
beast-mcmc | 3 | {bio-phylogeny,bio} |
@@ -65,115 +63,118 @@ Last-Update: Tue, 20 Oct 2020 01:42:04 +0000
clonalorigin | 3 | {bio} |
delly | 3 | {covid-19,bio} |
ecopcr | 3 | {bio} |
- embassy-domainatrix | 3 | {bio,cloud} |
+ embassy-domalign | 3 | {cloud,bio} |
+ embassy-domsearch | 3 | {cloud,bio} |
estscan | 3 | {bio} |
gatb-core | 3 | {bio} |
ghmm | 3 | {bio} |
jellyfish1 | 3 | {bio} |
libncl | 3 | {bio} |
- mauve-aligner | 3 | {bio} |
mrs | 3 | {bio} |
+ nutsqlite | 3 | {tools} |
orthanc-postgresql | 3 | {imaging} |
papyrus | 3 | {imaging-dev} |
- paraclu | 3 | {cloud,bio} |
- perm | 3 | {cloud,bio} |
phast | 3 | {bio} |
+ piler | 3 | {bio} |
+ placnet | 3 | {bio} |
+ prime-phylo | 3 | {cloud,bio} |
radiant | 3 | {bio} |
- saint | 3 | {bio} |
- seqsero | 3 | {bio} |
+ rambo-k | 3 | {bio} |
sight | 3 | {imaging} |
soapsnp | 3 | {bio} |
+ spread-phy | 3 | {bio,bio-phylogeny} |
tracetuner | 3 | {bio} |
treeview | 3 | {bio,bio-phylogeny} |
+ yaha | 3 | {bio} |
acedb | 2 | {bio,cloud} |
arden | 2 | {bio,cloud} |
+ bamkit | 2 | {covid-19,bio} |
bio-tradis | 2 | {bio-dev,bio} |
bitseq | 2 | {bio} |
busco | 2 | {bio,covid-19} |
+ clonalframeml | 2 | {covid-19,bio} |
dindel | 2 | {bio} |
+ embassy-domainatrix | 2 | {bio,cloud} |
fastml | 2 | {bio} |
+ fsm-lite | 2 | {bio} |
getdata | 2 | {bio} |
hinge | 2 | {bio} |
- ipig | 2 | {bio} |
lamarc | 2 | {bio} |
- librdp-taxonomy-tree-java | 2 | {bio-dev} |
+ mauve-aligner | 2 | {bio} |
mhap | 2 | {bio,bio-ngs} |
microbegps | 2 | {bio} |
murasaki | 2 | {bio} |
- neobio | 2 | {bio,cloud} |
- ngs-sdk | 2 | {bio-dev} |
- nutsqlite | 2 | {tools} |
openslide | 2 | {imaging-dev} |
orthanc-mysql | 2 | {imaging} |
oscar | 2 | {data,practice,tools} |
+ paraclu | 2 | {cloud,bio} |
+ perm | 2 | {cloud,bio} |
phybin | 2 | {bio} |
- piler | 2 | {bio} |
- placnet | 2 | {bio} |
- prime-phylo | 2 | {cloud,bio} |
- proalign | 2 | {bio,bio-phylogeny} |
+ plasmidseeker | 2 | {bio} |
+ pscan-chip | 2 | {bio} |
quorum | 2 | {bio} |
- rambo-k | 2 | {bio} |
- rdp-alignment | 2 | {bio} |
- rdp-classifier | 2 | {bio} |
+ rtax | 2 | {bio,cloud} |
+ runcircos-gui | 2 | {bio} |
+ saint | 2 | {bio} |
samblaster | 2 | {bio,covid-19} |
samtools-legacy | 2 | {bio-dev} |
scrm | 2 | {bio} |
segemehl | 2 | {bio} |
seqan | 2 | {bio-dev} |
+ soapaligner | 2 | {bio} |
spaced | 2 | {bio} |
sprai | 2 | {bio} |
+ suitename | 2 | {bio} |
surankco | 2 | {bio} |
tvc | 2 | {bio} |
- yaha | 2 | {bio} |
- zalign | 2 | {bio,cloud} |
- bamkit | 1 | {covid-19,bio} |
+ atropos | 1 | {bio} |
biosig | 1 | {physics,imaging-dev} |
- blimps | 1 | {bio} |
canu | 1 | {bio} |
cat-bat | 1 | {bio,covid-19} |
- clonalframeml | 1 | {covid-19,bio} |
conda-package-handling | 1 | {bio,bio-dev} |
ctn | 1 | {imaging-dev} |
embassy-phylip | 1 | {bio,cloud} |
emmax | 1 | {bio} |
- fsm-lite | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
htscodecs | 1 | {bio-dev,covid-19} |
+ ipig | 1 | {bio} |
jmodeltest | 1 | {bio,bio-phylogeny} |
+ kmerresistance | 1 | {bio} |
libctapimkt | 1 | {practice} |
libmaus2 | 1 | {bio-dev,covid-19} |
libpal-java | 1 | {bio-dev} |
+ librdp-taxonomy-tree-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
logol | 1 | {bio} |
metaphlan2 | 1 | {bio} |
ncbi-vdb | 1 | {bio-dev} |
+ neobio | 1 | {bio,cloud} |
+ ngs-sdk | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
pbcopper | 1 | {bio-dev} |
pbdagcon | 1 | {bio} |
pilercr | 1 | {bio} |
- plasmidseeker | 1 | {bio} |
+ proalign | 1 | {bio,bio-phylogeny} |
prottest | 1 | {bio-phylogeny,bio} |
- pscan-chip | 1 | {bio} |
q2templates | 1 | {bio} |
qcumber | 1 | {bio} |
- rtax | 1 | {bio,cloud} |
- runcircos-gui | 1 | {bio} |
+ rdp-alignment | 1 | {bio} |
+ rdp-classifier | 1 | {bio} |
sga | 1 | {bio} |
- sift | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
- soapaligner | 1 | {bio} |
+ skesa | 1 | {bio} |
srf | 1 | {bio-dev} |
stringtie | 1 | {covid-19,bio} |
- suitename | 1 | {bio} |
trace2dbest | 1 | {bio} |
vienna-rna | 1 | {covid-19,bio} |
- atropos | 0 | {bio} |
+ zalign | 1 | {bio,cloud} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
biosig | 0 | {physics} |
biosyntax | 0 | {bio} |
blasr | 0 | {bio,bio-ngs} |
+ blimps | 0 | {bio} |
bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
concurrentqueue | 0 | {bio-dev} |
@@ -182,7 +183,6 @@ Last-Update: Tue, 20 Oct 2020 01:42:04 +0000
emboss-explorer | 0 | {bio} |
fis-gtm | 0 | {his} |
intake | 0 | {bio,bio-dev} |
- kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbio-mage-utils-perl | 0 | {bio-dev} |
@@ -229,9 +229,9 @@ Last-Update: Tue, 20 Oct 2020 01:42:04 +0000
sbmltoolbox | 0 | {bio-dev} |
scrappie | 0 | {covid-19,bio} |
seq-gen | 0 | {bio} |
+ sift | 0 | {bio} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
- skesa | 0 | {bio} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
spaln | 0 | {bio,covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e634f5eb229412d3c0299c38c6ca7c24c99bd7c0
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e634f5eb229412d3c0299c38c6ca7c24c99bd7c0
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