Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
48a478b1 by Andreas Tille at 2020-10-21T13:46:05+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,35 +1,35 @@
-Last-Update: Wed, 21 Oct 2020 01:42:03 +0000
+Last-Update: Wed, 21 Oct 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 176 | {covid-19,imaging} |
- orthanc | 95 | {practice,imaging,covid-19} |
- orthanc-wsi | 48 | {practice,covid-19,his,oncology,imaging,laboratory} |
+ dcmtk | 175 | {covid-19,imaging} |
+ orthanc | 94 | {practice,imaging,covid-19} |
+ orthanc-wsi | 47 | {practice,covid-19,his,oncology,imaging,laboratory} |
gdcm | 40 | {imaging-dev} |
- dicom3tools | 32 | {imaging} |
- dicomscope | 29 | {imaging} |
- htsjdk | 28 | {bio-dev} |
+ dicom3tools | 33 | {imaging} |
+ htsjdk | 31 | {bio-dev} |
+ dicomscope | 30 | {imaging} |
dcm2niix | 20 | {imaging} |
- gdcm | 20 | {imaging,covid-19} |
+ gdcm | 19 | {imaging,covid-19} |
gnumed-server | 18 | {practice,covid-19} |
+ ngs-sdk | 17 | {bio-dev} |
gdcm | 16 | {imaging-dev} |
- ngs-sdk | 16 | {bio-dev} |
invesalius | 14 | {imaging} |
minc-tools | 14 | {imaging} |
biosig | 13 | {imaging,physics} |
- pixelmed | 13 | {imaging} |
+ nifticlib | 13 | {imaging} |
nifticlib | 12 | {imaging-dev} |
- nifticlib | 12 | {imaging} |
+ pixelmed | 12 | {imaging} |
+ ngs-sdk | 11 | {bio-dev} |
+ vtk-dicom | 11 | {imaging} |
adun.app | 10 | {bio} |
insighttoolkit4 | 10 | {imaging-dev} |
- ngs-sdk | 10 | {bio-dev} |
plastimatch | 10 | {imaging} |
- vtk-dicom | 10 | {imaging} |
+ king | 9 | {imaging,typesetting} |
openslide | 9 | {imaging} |
- king | 8 | {imaging,typesetting} |
+ librg-utils-perl | 8 | {bio} |
obitools | 8 | {bio} |
dicompyler | 7 | {oncology} |
- librg-utils-perl | 7 | {bio} |
melting | 7 | {bio,cloud} |
orthanc-webviewer | 7 | {imaging} |
bart-view | 6 | {imaging} |
@@ -37,28 +37,30 @@ Last-Update: Wed, 21 Oct 2020 01:42:03 +0000
multiqc | 6 | {covid-19,bio} |
biojava-live | 5 | {bio-dev} |
biomaj3-cli | 5 | {cloud} |
- elastix | 5 | {imaging} |
jebl2 | 5 | {bio-dev} |
libdivsufsort | 5 | {bio-dev} |
libsbml | 5 | {bio-dev} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
+ predictprotein | 5 | {bio} |
pymia | 5 | {imaging-dev} |
salmon | 5 | {bio,covid-19} |
stacks | 5 | {bio} |
staden | 5 | {bio} |
anfo | 4 | {bio,cloud} |
+ elastix | 4 | {imaging} |
fastlink | 4 | {cloud,bio} |
lagan | 4 | {bio} |
libminc | 4 | {imaging-dev} |
mipe | 4 | {cloud,bio} |
- phyutility | 4 | {cloud,bio} |
- predictprotein | 4 | {bio} |
+ rambo-k | 4 | {bio} |
seqsero | 4 | {bio} |
sibsim4 | 4 | {bio,cloud} |
alter-sequence-alignment | 3 | {bio} |
assemblytics | 3 | {bio} |
+ bamkit | 3 | {covid-19,bio} |
beast-mcmc | 3 | {bio-phylogeny,bio} |
biomaj3-daemon | 3 | {bio} |
+ bio-tradis | 3 | {bio-dev,bio} |
brig | 3 | {bio} |
clonalorigin | 3 | {bio} |
delly | 3 | {covid-19,bio} |
@@ -70,16 +72,18 @@ Last-Update: Wed, 21 Oct 2020 01:42:03 +0000
ghmm | 3 | {bio} |
jellyfish1 | 3 | {bio} |
libncl | 3 | {bio} |
+ mhap | 3 | {bio,bio-ngs} |
mrs | 3 | {bio} |
+ ngs-sdk | 3 | {bio-dev} |
nutsqlite | 3 | {tools} |
orthanc-postgresql | 3 | {imaging} |
papyrus | 3 | {imaging-dev} |
phast | 3 | {bio} |
+ phyutility | 3 | {cloud,bio} |
piler | 3 | {bio} |
placnet | 3 | {bio} |
prime-phylo | 3 | {cloud,bio} |
radiant | 3 | {bio} |
- rambo-k | 3 | {bio} |
sight | 3 | {imaging} |
soapsnp | 3 | {bio} |
spread-phy | 3 | {bio,bio-phylogeny} |
@@ -88,8 +92,6 @@ Last-Update: Wed, 21 Oct 2020 01:42:03 +0000
yaha | 3 | {bio} |
acedb | 2 | {bio,cloud} |
arden | 2 | {bio,cloud} |
- bamkit | 2 | {covid-19,bio} |
- bio-tradis | 2 | {bio-dev,bio} |
bitseq | 2 | {bio} |
busco | 2 | {bio,covid-19} |
clonalframeml | 2 | {covid-19,bio} |
@@ -101,10 +103,8 @@ Last-Update: Wed, 21 Oct 2020 01:42:03 +0000
hinge | 2 | {bio} |
lamarc | 2 | {bio} |
mauve-aligner | 2 | {bio} |
- mhap | 2 | {bio,bio-ngs} |
microbegps | 2 | {bio} |
murasaki | 2 | {bio} |
- openslide | 2 | {imaging-dev} |
orthanc-mysql | 2 | {imaging} |
oscar | 2 | {data,practice,tools} |
paraclu | 2 | {cloud,bio} |
@@ -140,6 +140,7 @@ Last-Update: Wed, 21 Oct 2020 01:42:03 +0000
ipig | 1 | {bio} |
jmodeltest | 1 | {bio,bio-phylogeny} |
kmerresistance | 1 | {bio} |
+ libbio-mage-utils-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libmaus2 | 1 | {bio-dev,covid-19} |
libpal-java | 1 | {bio-dev} |
@@ -149,7 +150,7 @@ Last-Update: Wed, 21 Oct 2020 01:42:03 +0000
metaphlan2 | 1 | {bio} |
ncbi-vdb | 1 | {bio-dev} |
neobio | 1 | {bio,cloud} |
- ngs-sdk | 1 | {bio-dev} |
+ openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
pbcopper | 1 | {bio-dev} |
pbdagcon | 1 | {bio} |
@@ -185,7 +186,6 @@ Last-Update: Wed, 21 Oct 2020 01:42:03 +0000
intake | 0 | {bio,bio-dev} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
- libbio-mage-utils-perl | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
libbpp-core | 0 | {bio-dev} |
libbpp-phyl | 0 | {bio-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/48a478b1ba08d5f3fe6f8c0314c381bc0bc4c488
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/48a478b1ba08d5f3fe6f8c0314c381bc0bc4c488
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