Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
07eee4aa by Andreas Tille at 2020-10-22T13:45:01+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,30 +1,30 @@
-Last-Update: Thu, 22 Oct 2020 01:42:04 +0000
+Last-Update: Thu, 22 Oct 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 175 | {covid-19,imaging} |
- orthanc | 94 | {practice,imaging,covid-19} |
- orthanc-wsi | 47 | {practice,covid-19,his,oncology,imaging,laboratory} |
+ orthanc | 95 | {practice,imaging,covid-19} |
+ orthanc-wsi | 48 | {practice,covid-19,his,oncology,imaging,laboratory} |
gdcm | 40 | {imaging-dev} |
- dicom3tools | 33 | {imaging} |
- htsjdk | 31 | {bio-dev} |
+ htsjdk | 33 | {bio-dev} |
+ dicom3tools | 32 | {imaging} |
dicomscope | 30 | {imaging} |
- dcm2niix | 20 | {imaging} |
+ dcm2niix | 19 | {imaging} |
gdcm | 19 | {imaging,covid-19} |
gnumed-server | 18 | {practice,covid-19} |
- ngs-sdk | 17 | {bio-dev} |
gdcm | 16 | {imaging-dev} |
+ ngs-sdk | 15 | {bio-dev} |
invesalius | 14 | {imaging} |
minc-tools | 14 | {imaging} |
biosig | 13 | {imaging,physics} |
nifticlib | 13 | {imaging} |
- nifticlib | 12 | {imaging-dev} |
pixelmed | 12 | {imaging} |
- ngs-sdk | 11 | {bio-dev} |
+ nifticlib | 11 | {imaging-dev} |
vtk-dicom | 11 | {imaging} |
- adun.app | 10 | {bio} |
insighttoolkit4 | 10 | {imaging-dev} |
+ ngs-sdk | 10 | {bio-dev} |
plastimatch | 10 | {imaging} |
+ adun.app | 9 | {bio} |
king | 9 | {imaging,typesetting} |
openslide | 9 | {imaging} |
librg-utils-perl | 8 | {bio} |
@@ -38,7 +38,6 @@ Last-Update: Thu, 22 Oct 2020 01:42:04 +0000
biojava-live | 5 | {bio-dev} |
biomaj3-cli | 5 | {cloud} |
jebl2 | 5 | {bio-dev} |
- libdivsufsort | 5 | {bio-dev} |
libsbml | 5 | {bio-dev} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
predictprotein | 5 | {bio} |
@@ -50,8 +49,10 @@ Last-Update: Thu, 22 Oct 2020 01:42:04 +0000
elastix | 4 | {imaging} |
fastlink | 4 | {cloud,bio} |
lagan | 4 | {bio} |
+ libdivsufsort | 4 | {bio-dev} |
libminc | 4 | {imaging-dev} |
mipe | 4 | {cloud,bio} |
+ ngs-sdk | 4 | {bio-dev} |
rambo-k | 4 | {bio} |
seqsero | 4 | {bio} |
sibsim4 | 4 | {bio,cloud} |
@@ -72,10 +73,7 @@ Last-Update: Thu, 22 Oct 2020 01:42:04 +0000
ghmm | 3 | {bio} |
jellyfish1 | 3 | {bio} |
libncl | 3 | {bio} |
- mhap | 3 | {bio,bio-ngs} |
mrs | 3 | {bio} |
- ngs-sdk | 3 | {bio-dev} |
- nutsqlite | 3 | {tools} |
orthanc-postgresql | 3 | {imaging} |
papyrus | 3 | {imaging-dev} |
phast | 3 | {bio} |
@@ -103,8 +101,10 @@ Last-Update: Thu, 22 Oct 2020 01:42:04 +0000
hinge | 2 | {bio} |
lamarc | 2 | {bio} |
mauve-aligner | 2 | {bio} |
+ mhap | 2 | {bio,bio-ngs} |
microbegps | 2 | {bio} |
murasaki | 2 | {bio} |
+ nutsqlite | 2 | {tools} |
orthanc-mysql | 2 | {imaging} |
oscar | 2 | {data,practice,tools} |
paraclu | 2 | {cloud,bio} |
@@ -117,10 +117,8 @@ Last-Update: Thu, 22 Oct 2020 01:42:04 +0000
runcircos-gui | 2 | {bio} |
saint | 2 | {bio} |
samblaster | 2 | {bio,covid-19} |
- samtools-legacy | 2 | {bio-dev} |
scrm | 2 | {bio} |
segemehl | 2 | {bio} |
- seqan | 2 | {bio-dev} |
soapaligner | 2 | {bio} |
spaced | 2 | {bio} |
sprai | 2 | {bio} |
@@ -135,32 +133,29 @@ Last-Update: Thu, 22 Oct 2020 01:42:04 +0000
ctn | 1 | {imaging-dev} |
embassy-phylip | 1 | {bio,cloud} |
emmax | 1 | {bio} |
- gatb-core | 1 | {bio-dev} |
- htscodecs | 1 | {bio-dev,covid-19} |
ipig | 1 | {bio} |
jmodeltest | 1 | {bio,bio-phylogeny} |
kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
- libmaus2 | 1 | {bio-dev,covid-19} |
libpal-java | 1 | {bio-dev} |
librdp-taxonomy-tree-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
logol | 1 | {bio} |
metaphlan2 | 1 | {bio} |
- ncbi-vdb | 1 | {bio-dev} |
neobio | 1 | {bio,cloud} |
- openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
- pbcopper | 1 | {bio-dev} |
pbdagcon | 1 | {bio} |
pilercr | 1 | {bio} |
+ plasmidid | 1 | {covid-19,bio} |
proalign | 1 | {bio,bio-phylogeny} |
prottest | 1 | {bio-phylogeny,bio} |
q2templates | 1 | {bio} |
qcumber | 1 | {bio} |
rdp-alignment | 1 | {bio} |
rdp-classifier | 1 | {bio} |
+ samtools-legacy | 1 | {bio-dev} |
+ seqan | 1 | {bio-dev} |
sga | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
@@ -183,6 +178,8 @@ Last-Update: Thu, 22 Oct 2020 01:42:04 +0000
dextractor | 0 | {covid-19,bio} |
emboss-explorer | 0 | {bio} |
fis-gtm | 0 | {his} |
+ gatb-core | 0 | {bio-dev} |
+ htscodecs | 0 | {bio-dev,covid-19} |
intake | 0 | {bio,bio-dev} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -201,6 +198,7 @@ Last-Update: Thu, 22 Oct 2020 01:42:04 +0000
libhmsbeagle | 0 | {bio-dev} |
libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
+ libmaus2 | 0 | {bio-dev,covid-19} |
libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
libmuscle | 0 | {bio-dev} |
@@ -217,13 +215,15 @@ Last-Update: Thu, 22 Oct 2020 01:42:04 +0000
milib | 0 | {covid-19,bio-dev} |
murasaki | 0 | {bio} |
nanosv | 0 | {bio,covid-19} |
+ ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
opencfu | 0 | {laboratory} |
+ openslide | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
+ pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pique | 0 | {bio} |
- plasmidid | 0 | {covid-19,bio} |
pplacer | 0 | {bio,bio-phylogeny,covid-19} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
@@ -244,5 +244,6 @@ Last-Update: Thu, 22 Oct 2020 01:42:04 +0000
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
shovill | -1 | {bio,covid-19} |
-(271 rows)
+ svim | -1 | {bio} |
+(272 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/07eee4aa0bcebc69b3a086213e257f6c60edd0d0
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/07eee4aa0bcebc69b3a086213e257f6c60edd0d0
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