Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
688af5f3 by Andreas Tille at 2020-10-23T13:45:19+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,17 +1,17 @@
-Last-Update: Fri, 23 Oct 2020 01:42:04 +0000
+Last-Update: Fri, 23 Oct 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 175 | {covid-19,imaging} |
orthanc | 95 | {practice,imaging,covid-19} |
orthanc-wsi | 48 | {practice,covid-19,his,oncology,imaging,laboratory} |
- gdcm | 40 | {imaging-dev} |
- htsjdk | 33 | {bio-dev} |
+ gdcm | 39 | {imaging-dev} |
+ htsjdk | 34 | {bio-dev} |
dicom3tools | 32 | {imaging} |
- dicomscope | 30 | {imaging} |
+ dicomscope | 31 | {imaging} |
dcm2niix | 19 | {imaging} |
gdcm | 19 | {imaging,covid-19} |
- gnumed-server | 18 | {practice,covid-19} |
+ gnumed-server | 17 | {practice,covid-19} |
gdcm | 16 | {imaging-dev} |
ngs-sdk | 15 | {bio-dev} |
invesalius | 14 | {imaging} |
@@ -19,163 +19,175 @@ Last-Update: Fri, 23 Oct 2020 01:42:04 +0000
biosig | 13 | {imaging,physics} |
nifticlib | 13 | {imaging} |
pixelmed | 12 | {imaging} |
- nifticlib | 11 | {imaging-dev} |
vtk-dicom | 11 | {imaging} |
insighttoolkit4 | 10 | {imaging-dev} |
ngs-sdk | 10 | {bio-dev} |
+ nifticlib | 10 | {imaging-dev} |
plastimatch | 10 | {imaging} |
adun.app | 9 | {bio} |
king | 9 | {imaging,typesetting} |
+ librg-utils-perl | 9 | {bio} |
+ obitools | 9 | {bio} |
openslide | 9 | {imaging} |
- librg-utils-perl | 8 | {bio} |
- obitools | 8 | {bio} |
+ melting | 8 | {bio,cloud} |
dicompyler | 7 | {oncology} |
- melting | 7 | {bio,cloud} |
+ ea-utils | 7 | {bio} |
orthanc-webviewer | 7 | {imaging} |
+ salmon | 7 | {bio,covid-19} |
bart-view | 6 | {imaging} |
- ea-utils | 6 | {bio} |
+ biojava-live | 6 | {bio-dev} |
+ biomaj3-cli | 6 | {cloud} |
+ jebl2 | 6 | {bio-dev} |
multiqc | 6 | {covid-19,bio} |
- biojava-live | 5 | {bio-dev} |
- biomaj3-cli | 5 | {cloud} |
- jebl2 | 5 | {bio-dev} |
+ predictprotein | 6 | {bio} |
+ stacks | 6 | {bio} |
+ staden | 6 | {bio} |
+ anfo | 5 | {bio,cloud} |
+ fastlink | 5 | {cloud,bio} |
+ lagan | 5 | {bio} |
libsbml | 5 | {bio-dev} |
+ mipe | 5 | {cloud,bio} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
- predictprotein | 5 | {bio} |
pymia | 5 | {imaging-dev} |
- salmon | 5 | {bio,covid-19} |
- stacks | 5 | {bio} |
- staden | 5 | {bio} |
- anfo | 4 | {bio,cloud} |
+ sibsim4 | 5 | {bio,cloud} |
+ alter-sequence-alignment | 4 | {bio} |
+ assemblytics | 4 | {bio} |
+ beast-mcmc | 4 | {bio-phylogeny,bio} |
+ biomaj3-daemon | 4 | {bio} |
+ bio-tradis | 4 | {bio-dev,bio} |
+ brig | 4 | {bio} |
+ clonalorigin | 4 | {bio} |
+ delly | 4 | {covid-19,bio} |
+ ecopcr | 4 | {bio} |
elastix | 4 | {imaging} |
- fastlink | 4 | {cloud,bio} |
- lagan | 4 | {bio} |
+ embassy-domalign | 4 | {cloud,bio} |
+ embassy-domsearch | 4 | {cloud,bio} |
+ estscan | 4 | {bio} |
+ gatb-core | 4 | {bio} |
+ jellyfish1 | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
libminc | 4 | {imaging-dev} |
- mipe | 4 | {cloud,bio} |
+ libncl | 4 | {bio} |
ngs-sdk | 4 | {bio-dev} |
+ phast | 4 | {bio} |
+ phyutility | 4 | {cloud,bio} |
+ piler | 4 | {bio} |
+ placnet | 4 | {bio} |
+ prime-phylo | 4 | {cloud,bio} |
+ radiant | 4 | {bio} |
rambo-k | 4 | {bio} |
seqsero | 4 | {bio} |
- sibsim4 | 4 | {bio,cloud} |
- alter-sequence-alignment | 3 | {bio} |
- assemblytics | 3 | {bio} |
+ soapsnp | 4 | {bio} |
+ spread-phy | 4 | {bio,bio-phylogeny} |
+ tracetuner | 4 | {bio} |
+ treeview | 4 | {bio,bio-phylogeny} |
+ yaha | 4 | {bio} |
+ arden | 3 | {bio,cloud} |
bamkit | 3 | {covid-19,bio} |
- beast-mcmc | 3 | {bio-phylogeny,bio} |
- biomaj3-daemon | 3 | {bio} |
- bio-tradis | 3 | {bio-dev,bio} |
- brig | 3 | {bio} |
- clonalorigin | 3 | {bio} |
- delly | 3 | {covid-19,bio} |
- ecopcr | 3 | {bio} |
- embassy-domalign | 3 | {cloud,bio} |
- embassy-domsearch | 3 | {cloud,bio} |
- estscan | 3 | {bio} |
- gatb-core | 3 | {bio} |
+ bitseq | 3 | {bio} |
+ busco | 3 | {bio,covid-19} |
+ clonalframeml | 3 | {covid-19,bio} |
+ dindel | 3 | {bio} |
+ embassy-domainatrix | 3 | {bio,cloud} |
+ fastml | 3 | {bio} |
+ fsm-lite | 3 | {bio} |
ghmm | 3 | {bio} |
- jellyfish1 | 3 | {bio} |
- libncl | 3 | {bio} |
+ hinge | 3 | {bio} |
+ lamarc | 3 | {bio} |
+ mauve-aligner | 3 | {bio} |
+ mhap | 3 | {bio,bio-ngs} |
+ microbegps | 3 | {bio} |
mrs | 3 | {bio} |
+ murasaki | 3 | {bio} |
orthanc-postgresql | 3 | {imaging} |
papyrus | 3 | {imaging-dev} |
- phast | 3 | {bio} |
- phyutility | 3 | {cloud,bio} |
- piler | 3 | {bio} |
- placnet | 3 | {bio} |
- prime-phylo | 3 | {cloud,bio} |
- radiant | 3 | {bio} |
+ paraclu | 3 | {cloud,bio} |
+ perm | 3 | {cloud,bio} |
+ phybin | 3 | {bio} |
+ plasmidseeker | 3 | {bio} |
+ pscan-chip | 3 | {bio} |
+ quorum | 3 | {bio} |
+ rtax | 3 | {bio,cloud} |
+ saint | 3 | {bio} |
+ samblaster | 3 | {bio,covid-19} |
+ scrm | 3 | {bio} |
+ segemehl | 3 | {bio} |
sight | 3 | {imaging} |
- soapsnp | 3 | {bio} |
- spread-phy | 3 | {bio,bio-phylogeny} |
- tracetuner | 3 | {bio} |
- treeview | 3 | {bio,bio-phylogeny} |
- yaha | 3 | {bio} |
+ soapaligner | 3 | {bio} |
+ spaced | 3 | {bio} |
+ sprai | 3 | {bio} |
+ suitename | 3 | {bio} |
+ surankco | 3 | {bio} |
acedb | 2 | {bio,cloud} |
- arden | 2 | {bio,cloud} |
- bitseq | 2 | {bio} |
- busco | 2 | {bio,covid-19} |
- clonalframeml | 2 | {covid-19,bio} |
- dindel | 2 | {bio} |
- embassy-domainatrix | 2 | {bio,cloud} |
- fastml | 2 | {bio} |
- fsm-lite | 2 | {bio} |
+ atropos | 2 | {bio} |
+ canu | 2 | {bio} |
+ cat-bat | 2 | {bio,covid-19} |
+ emmax | 2 | {bio} |
getdata | 2 | {bio} |
- hinge | 2 | {bio} |
- lamarc | 2 | {bio} |
- mauve-aligner | 2 | {bio} |
- mhap | 2 | {bio,bio-ngs} |
- microbegps | 2 | {bio} |
- murasaki | 2 | {bio} |
+ ipig | 2 | {bio} |
+ jmodeltest | 2 | {bio,bio-phylogeny} |
+ kmerresistance | 2 | {bio} |
+ libpal-java | 2 | {bio-dev} |
+ librdp-taxonomy-tree-java | 2 | {bio-dev} |
+ logol | 2 | {bio} |
+ neobio | 2 | {bio,cloud} |
nutsqlite | 2 | {tools} |
orthanc-mysql | 2 | {imaging} |
oscar | 2 | {data,practice,tools} |
- paraclu | 2 | {cloud,bio} |
- perm | 2 | {cloud,bio} |
- phybin | 2 | {bio} |
- plasmidseeker | 2 | {bio} |
- pscan-chip | 2 | {bio} |
- quorum | 2 | {bio} |
- rtax | 2 | {bio,cloud} |
+ pbdagcon | 2 | {bio} |
+ pilercr | 2 | {bio} |
+ proalign | 2 | {bio,bio-phylogeny} |
+ prottest | 2 | {bio-phylogeny,bio} |
+ qcumber | 2 | {bio} |
+ rdp-alignment | 2 | {bio} |
+ rdp-classifier | 2 | {bio} |
runcircos-gui | 2 | {bio} |
- saint | 2 | {bio} |
- samblaster | 2 | {bio,covid-19} |
- scrm | 2 | {bio} |
- segemehl | 2 | {bio} |
- soapaligner | 2 | {bio} |
- spaced | 2 | {bio} |
- sprai | 2 | {bio} |
- suitename | 2 | {bio} |
- surankco | 2 | {bio} |
+ sga | 2 | {bio} |
+ skesa | 2 | {bio} |
+ stringtie | 2 | {covid-19,bio} |
+ trace2dbest | 2 | {bio} |
tvc | 2 | {bio} |
- atropos | 1 | {bio} |
+ zalign | 2 | {bio,cloud} |
+ bbmap | 1 | {bio,covid-19} |
biosig | 1 | {physics,imaging-dev} |
- canu | 1 | {bio} |
- cat-bat | 1 | {bio,covid-19} |
- conda-package-handling | 1 | {bio,bio-dev} |
+ blasr | 1 | {bio,bio-ngs} |
+ bustools | 1 | {bio,covid-19} |
ctn | 1 | {imaging-dev} |
+ cufflinks | 1 | {bio,cloud} |
+ dextractor | 1 | {covid-19,bio} |
embassy-phylip | 1 | {bio,cloud} |
- emmax | 1 | {bio} |
- ipig | 1 | {bio} |
- jmodeltest | 1 | {bio,bio-phylogeny} |
- kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
- libpal-java | 1 | {bio-dev} |
- librdp-taxonomy-tree-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- logol | 1 | {bio} |
+ lighter | 1 | {covid-19,bio} |
metaphlan2 | 1 | {bio} |
- neobio | 1 | {bio,cloud} |
+ nanosv | 1 | {bio,covid-19} |
opensurgsim | 1 | {imaging-dev} |
- pbdagcon | 1 | {bio} |
- pilercr | 1 | {bio} |
+ pique | 1 | {bio} |
plasmidid | 1 | {covid-19,bio} |
- proalign | 1 | {bio,bio-phylogeny} |
- prottest | 1 | {bio-phylogeny,bio} |
+ pplacer | 1 | {bio,bio-phylogeny,covid-19} |
q2templates | 1 | {bio} |
- qcumber | 1 | {bio} |
- rdp-alignment | 1 | {bio} |
- rdp-classifier | 1 | {bio} |
+ sambamba | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
+ scrappie | 1 | {covid-19,bio} |
seqan | 1 | {bio-dev} |
- sga | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
- skesa | 1 | {bio} |
+ skewer | 1 | {bio} |
+ spaln | 1 | {bio,covid-19} |
srf | 1 | {bio-dev} |
- stringtie | 1 | {covid-19,bio} |
- trace2dbest | 1 | {bio} |
+ thesias | 1 | {covid-19,bio} |
+ tophat-recondition | 1 | {bio,covid-19} |
+ varscan | 1 | {covid-19,bio} |
vienna-rna | 1 | {covid-19,bio} |
- zalign | 1 | {bio,cloud} |
+ yanagiba | 1 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
- bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
biosig | 0 | {physics} |
biosyntax | 0 | {bio} |
- blasr | 0 | {bio,bio-ngs} |
blimps | 0 | {bio} |
- bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
concurrentqueue | 0 | {bio-dev} |
- cufflinks | 0 | {bio,cloud} |
- dextractor | 0 | {covid-19,bio} |
+ conda-package-handling | 0 | {bio,bio-dev} |
emboss-explorer | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
@@ -208,13 +220,11 @@ Last-Update: Fri, 23 Oct 2020 01:42:04 +0000
libseqlib | 0 | {bio-dev} |
libstatgen | 0 | {bio-dev} |
libxdf | 0 | {imaging-dev} |
- lighter | 0 | {covid-19,bio} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
milib | 0 | {covid-19,bio-dev} |
murasaki | 0 | {bio} |
- nanosv | 0 | {bio,covid-19} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
opencfu | 0 | {laboratory} |
@@ -223,24 +233,14 @@ Last-Update: Fri, 23 Oct 2020 01:42:04 +0000
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- pique | 0 | {bio} |
- pplacer | 0 | {bio,bio-phylogeny,covid-19} |
- sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
- scrappie | 0 | {covid-19,bio} |
seq-gen | 0 | {bio} |
sift | 0 | {bio} |
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
- skewer | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
- spaln | 0 | {bio,covid-19} |
- thesias | 0 | {covid-19,bio} |
- tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
- varscan | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
- yanagiba | 0 | {covid-19,bio} |
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
shovill | -1 | {bio,covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/688af5f34518c7558321dfea960488b594b2f3ca
--
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