[med-svn] [Git][med-team/ncbi-blastplus][master] 6 commits: New upstream version 2.10.1+ds
Aaron M. Ucko
gitlab at salsa.debian.org
Fri Oct 23 22:31:37 BST 2020
Aaron M. Ucko pushed to branch master at Debian Med / ncbi-blastplus
Commits:
b3639c90 by Aaron M. Ucko at 2020-10-23T14:01:18-04:00
New upstream version 2.10.1+ds
- - - - -
d3605f7d by Aaron M. Ucko at 2020-10-23T14:09:47-04:00
Update upstream source from tag 'upstream/2.10.1+ds'
Update to upstream version '2.10.1+ds'.
Repack without c++/src/build-system/project_tree_builder_gui/bin.
Debian builds make no use of this (Java) GUI or supporting third-party
jars, and could do without prebuilt binaries even if they did use it.
- - - - -
8f1185dd by Aaron M. Ucko at 2020-10-23T14:12:32-04:00
debian/{copyright,watch}: Update for repack without .../ptb_gui/bin.
* copyright: Set Files-Excluded accordingly.
* watch: Set dversionmangle and repacksuffix options accordingly.
- - - - -
7fb935e7 by Aaron M. Ucko at 2020-10-23T17:16:48-04:00
debian/copyright: Correct typos for c++/src/html/ncbi_menu*.js.
* Replace duplicate .../ncbi_menu_dnd.js by .../ncbi_menu_dyn.js.
* Correct capitalization of Gary Smith's last name.
* Remove duplicate 1997-1999 for Netscape Communications Corp.
- - - - -
e7f8b310 by Aaron M. Ucko at 2020-10-23T17:21:31-04:00
debian/source/lintian-overrides: Extend ncbi_menu*.js overrides.
Override source-contains-prebuilt-javascript-object in addition to
source-is-missing. (These files are editable despite long lines.)
- - - - -
5a929889 by Aaron M. Ucko at 2020-10-23T17:23:47-04:00
Finalize ncbi-blast+ 2.10.1+ds-1 for unstable.
- - - - -
7 changed files:
- − c++/src/build-system/project_tree_builder_gui/bin/lib/swing-layout-1.0.3.jar
- − c++/src/build-system/project_tree_builder_gui/bin/lib/swing-layout-1.0.4.jar
- − c++/src/build-system/project_tree_builder_gui/bin/ptbgui.jar
- debian/changelog
- debian/copyright
- debian/source/lintian-overrides
- debian/watch
Changes:
=====================================
c++/src/build-system/project_tree_builder_gui/bin/lib/swing-layout-1.0.3.jar deleted
=====================================
Binary files a/c++/src/build-system/project_tree_builder_gui/bin/lib/swing-layout-1.0.3.jar and /dev/null differ
=====================================
c++/src/build-system/project_tree_builder_gui/bin/lib/swing-layout-1.0.4.jar deleted
=====================================
Binary files a/c++/src/build-system/project_tree_builder_gui/bin/lib/swing-layout-1.0.4.jar and /dev/null differ
=====================================
c++/src/build-system/project_tree_builder_gui/bin/ptbgui.jar deleted
=====================================
Binary files a/c++/src/build-system/project_tree_builder_gui/bin/ptbgui.jar and /dev/null differ
=====================================
debian/changelog
=====================================
@@ -1,3 +1,19 @@
+ncbi-blast+ (2.10.1+ds-1) unstable; urgency=medium
+
+ * Repack without c++/src/build-system/project_tree_builder_gui/bin.
+ Debian builds make no use of this (Java) GUI or supporting third-party
+ jars, and could do without prebuilt binaries even if they did use it..
+ * debian/copyright:
+ - Set Files-Excluded accordingly.
+ - Correct typos for c++/src/html/ncbi_menu*.js; in particular, replace
+ duplicate .../ncbi_menu_dnd.js by .../ncbi_menu_dyn.js.
+ * debian/watch: Set dversionmangle and repacksuffix options accordingly.
+ * debian/source/lintian-overrides: For ncbi_menu*.js, which are editable
+ despite long lines, override source-contains-prebuilt-javascript-object
+ in addition to source-is-missing.
+
+ -- Aaron M. Ucko <ucko at debian.org> Fri, 23 Oct 2020 17:23:46 -0400
+
ncbi-blast+ (2.10.1-3) unstable; urgency=medium
* debian/patches/tune_lmdb_defaults: Scale down slightly more on 32-bit
=====================================
debian/copyright
=====================================
@@ -1,6 +1,7 @@
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: ncbi-blast+
Upstream-Contact: blastsoft at ncbi.nlm.nih.gov
+Files-Excluded: c++/src/build-system/project_tree_builder_gui/bin
Files: c++/*
Copyright: NCBI
@@ -42,9 +43,9 @@ License: Apache-2.0
Files: c++/src/html/ncbi_menu.js
c++/src/html/ncbi_menu_dnd.js
- c++/src/html/ncbi_menu_dnd.js
-Copyright: 1997 Gary SMith
- 1997-1999 1997-1999 Netscape Communications Corp.
+ c++/src/html/ncbi_menu_dyn.js
+Copyright: 1997 Gary Smith
+ 1997-1999 Netscape Communications Corp.
License: Netscape
Netscape grants you a royalty free license to use or modify this
software provided that this copyright notice appears on all copies.
=====================================
debian/source/lintian-overrides
=====================================
@@ -2,6 +2,9 @@
ncbi-blast+ source: source-is-missing c++/src/html/ncbi_menu.js line length is 357 characters (>256)
ncbi-blast+ source: source-is-missing c++/src/html/ncbi_menu_dnd.js line length is 333 characters (>256)
ncbi-blast+ source: source-is-missing c++/src/html/ncbi_menu_dyn.js line length is 333 characters (>256)
+ncbi-blast+ source: source-contains-prebuilt-javascript-object c++/src/html/ncbi_menu.js line length is 357 characters (>256)
+ncbi-blast+ source: source-contains-prebuilt-javascript-object c++/src/html/ncbi_menu_dnd.js line length is 333 characters (>256)
+ncbi-blast+ source: source-contains-prebuilt-javascript-object c++/src/html/ncbi_menu_dyn.js line length is 333 characters (>256)
# JSON not evil license, related code is not present
ncbi-blast+ source: license-problem-json-evil c++/include/misc/jsonwrapp/rapidjson10/license.txt
ncbi-blast+ source: license-problem-json-evil c++/include/misc/jsonwrapp/rapidjson11/license.txt
=====================================
debian/watch
=====================================
@@ -1,3 +1,3 @@
version=3
-opts=filenamemangle=s/\+-src/-orig/,filenamemangle=s/blast/blast+/ \
+opts=filenamemangle=s/\+-src/-orig/,filenamemangle=s/blast/blast+/,dversionmangle=s/\+ds//,repacksuffix=+ds \
https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-(.*)\+-src\.tar\.gz debian uupdate
View it on GitLab: https://salsa.debian.org/med-team/ncbi-blastplus/-/compare/bcaf181b6d786ce85b77648643a5de52a23515ab...5a92988942401bcec4bb4b5212793f79eab09ee0
--
View it on GitLab: https://salsa.debian.org/med-team/ncbi-blastplus/-/compare/bcaf181b6d786ce85b77648643a5de52a23515ab...5a92988942401bcec4bb4b5212793f79eab09ee0
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