[med-svn] [Git][med-team/lumpy-sv][master] 4 commits: Build-Depends: python3-pysam

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / lumpy-sv


Commits:
cb747b14 by Andreas Tille at 2020-10-26T22:16:35+01:00
Build-Depends: python3-pysam

- - - - -
2a1a3bd8 by Andreas Tille at 2020-10-26T22:18:30+01:00
Build-Depends: libcurl4-gnutls-dev

- - - - -
91f0d3bb by Andreas Tille at 2020-10-26T22:19:56+01:00
Fix binary-all builds

- - - - -
322241ea by Andreas Tille at 2020-10-26T22:28:52+01:00
routine-update: Ready to upload to unstable

- - - - -


3 changed files:

- debian/changelog
- debian/control
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,14 @@
+lumpy-sv (0.3.1+dfsg-2) unstable; urgency=medium
+
+  * Build-Depends: python3-pysam
+    Closes: #972935
+  * Build-Depends: libcurl4-gnutls-dev
+    Closes: #972934
+  * Fix binary-all builds
+    Closes: #972933
+
+ -- Andreas Tille <tille at debian.org>  Mon, 26 Oct 2020 22:20:27 +0100
+
 lumpy-sv (0.3.1+dfsg-1) unstable; urgency=medium
 
   * New upstream version 0.3.1+dfsg


=====================================
debian/control
=====================================
@@ -12,8 +12,9 @@ Build-Depends: debhelper-compat (= 13),
                libsqlite3-dev,
                libhts-dev,
                libssl-dev,
-               libcurl4-openssl-dev | libcurl4-dev,
-               samtools
+               libcurl4-gnutls-dev,
+               samtools,
+               python3-pysam
 Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/lumpy-sv
 Vcs-Git: https://salsa.debian.org/med-team/lumpy-sv.git


=====================================
debian/rules
=====================================
@@ -20,7 +20,7 @@ override_dh_install:
 	cat debian/missing-sources/pe.pos_sorted.sam |samtools view -Sb - > data/pe.pos_sorted.bam
 	cat debian/missing-sources/sr.pos_sorted.sam |samtools view -Sb - > data/sr.pos_sorted.bam
 	dh_install
-	rm debian/$(DEB_SOURCE)/usr/share/$(DEB_SOURCE)/scripts/lumpyexpress.config
+	rm -f debian/$(DEB_SOURCE)/usr/share/$(DEB_SOURCE)/scripts/lumpyexpress.config
 
 override_dh_link:
 	dh_link



View it on GitLab: https://salsa.debian.org/med-team/lumpy-sv/-/compare/152e14e3eb24d40d5d4b83a372ab161b243e45ca...322241ea1e7b57084b2f97af4a3f217acc6a3e1c

-- 
View it on GitLab: https://salsa.debian.org/med-team/lumpy-sv/-/compare/152e14e3eb24d40d5d4b83a372ab161b243e45ca...322241ea1e7b57084b2f97af4a3f217acc6a3e1c
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20201026/78f44f69/attachment-0001.html>