[med-svn] [Git][med-team/bedtools][master] 3 commits: Fix permisions of .sam files

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / bedtools


Commits:
24473a22 by Andreas Tille at 2020-10-28T16:40:50+01:00
Fix permisions of .sam files

- - - - -
7d707843 by Andreas Tille at 2020-10-28T16:41:15+01:00
Delete test binary to make sure it will not be installed

- - - - -
438dfd51 by Andreas Tille at 2020-10-28T16:41:40+01:00
DEP3

- - - - -


3 changed files:

- debian/changelog
- debian/patches/fix_intersect_test.patch
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,5 +1,6 @@
 bedtools (2.29.2+dfsg-4) UNRELEASED; urgency=medium
 
+  [ Michael R. Crusoe ]
   * Team upload.
   * Remove the need for samtools via patch from upstream.
   * Include patch from Bernhard Übelacker to fix 32-bit builds. TODO: the
@@ -9,6 +10,11 @@ bedtools (2.29.2+dfsg-4) UNRELEASED; urgency=medium
   * Add salsa-ci file (routine-update)
   * Rules-Requires-Root: no (routine-update)
 
+  [ Andreas Tille ]
+  * Fix permisions of .sam files
+  * Delete test binary to make sure it will not be installed
+  * DEP3
+
  -- Michael R. Crusoe <michael.crusoe at gmail.com>  Fri, 14 Feb 2020 16:50:58 +0100
 
 bedtools (2.29.2+dfsg-3) unstable; urgency=medium


=====================================
debian/patches/fix_intersect_test.patch
=====================================
@@ -1,3 +1,7 @@
+Author: Steffen Moeller
+Last-Update: 2020-01-23 11:47:03 +0100
+Description: Fix the intersect test
+
 Index: bedtools/test/intersect/new_test-intersect.sh
 ===================================================================
 --- bedtools.orig/test/intersect/new_test-intersect.sh


=====================================
debian/rules
=====================================
@@ -43,6 +43,7 @@ override_dh_fixperms-arch:
 	dh_fixperms
 	chmod -x $(CURDIR)/debian/$(DEB_SOURCE)/usr/share/bedtools/genomes/*.genome
 	find $(CURDIR)/debian -name "*.bed" -executable -exec chmod -x \{\} \;
+	find $(CURDIR)/debian -name "*.sam" -executable -exec chmod -x \{\} \;
 	find $(CURDIR)/debian -name "*.sh"  -not -executable -exec chmod +x \{\} \;
 
 override_dh_auto_test:
@@ -51,6 +52,7 @@ ifneq (,$(filter $(DEB_HOST_ARCH),i386 kfreebsd-i386 hurd-i386 armel armhf mipse
 	mv test/shuffle debian/
 endif
 	dh_auto_test
+	find . -name htsutil -delete
 ifneq (,$(filter $(DEB_HOST_ARCH),i386 kfreebsd-i386 hurd-i386 armel armhf mipsel))
 	mv debian/shuffle test/
 endif



View it on GitLab: https://salsa.debian.org/med-team/bedtools/-/compare/9889a387f292fabdb790f306a905cf805a56e55b...438dfd51ae9fcd6429bff4bdef1328ae54b98aab

-- 
View it on GitLab: https://salsa.debian.org/med-team/bedtools/-/compare/9889a387f292fabdb790f306a905cf805a56e55b...438dfd51ae9fcd6429bff4bdef1328ae54b98aab
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