[med-svn] [Git][med-team/bedtools][master] 3 commits: Fix permisions of .sam files
Andreas Tille
gitlab at salsa.debian.org
Wed Oct 28 15:41:54 GMT 2020
Andreas Tille pushed to branch master at Debian Med / bedtools
Commits:
24473a22 by Andreas Tille at 2020-10-28T16:40:50+01:00
Fix permisions of .sam files
- - - - -
7d707843 by Andreas Tille at 2020-10-28T16:41:15+01:00
Delete test binary to make sure it will not be installed
- - - - -
438dfd51 by Andreas Tille at 2020-10-28T16:41:40+01:00
DEP3
- - - - -
3 changed files:
- debian/changelog
- debian/patches/fix_intersect_test.patch
- debian/rules
Changes:
=====================================
debian/changelog
=====================================
@@ -1,5 +1,6 @@
bedtools (2.29.2+dfsg-4) UNRELEASED; urgency=medium
+ [ Michael R. Crusoe ]
* Team upload.
* Remove the need for samtools via patch from upstream.
* Include patch from Bernhard Übelacker to fix 32-bit builds. TODO: the
@@ -9,6 +10,11 @@ bedtools (2.29.2+dfsg-4) UNRELEASED; urgency=medium
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
+ [ Andreas Tille ]
+ * Fix permisions of .sam files
+ * Delete test binary to make sure it will not be installed
+ * DEP3
+
-- Michael R. Crusoe <michael.crusoe at gmail.com> Fri, 14 Feb 2020 16:50:58 +0100
bedtools (2.29.2+dfsg-3) unstable; urgency=medium
=====================================
debian/patches/fix_intersect_test.patch
=====================================
@@ -1,3 +1,7 @@
+Author: Steffen Moeller
+Last-Update: 2020-01-23 11:47:03 +0100
+Description: Fix the intersect test
+
Index: bedtools/test/intersect/new_test-intersect.sh
===================================================================
--- bedtools.orig/test/intersect/new_test-intersect.sh
=====================================
debian/rules
=====================================
@@ -43,6 +43,7 @@ override_dh_fixperms-arch:
dh_fixperms
chmod -x $(CURDIR)/debian/$(DEB_SOURCE)/usr/share/bedtools/genomes/*.genome
find $(CURDIR)/debian -name "*.bed" -executable -exec chmod -x \{\} \;
+ find $(CURDIR)/debian -name "*.sam" -executable -exec chmod -x \{\} \;
find $(CURDIR)/debian -name "*.sh" -not -executable -exec chmod +x \{\} \;
override_dh_auto_test:
@@ -51,6 +52,7 @@ ifneq (,$(filter $(DEB_HOST_ARCH),i386 kfreebsd-i386 hurd-i386 armel armhf mipse
mv test/shuffle debian/
endif
dh_auto_test
+ find . -name htsutil -delete
ifneq (,$(filter $(DEB_HOST_ARCH),i386 kfreebsd-i386 hurd-i386 armel armhf mipsel))
mv debian/shuffle test/
endif
View it on GitLab: https://salsa.debian.org/med-team/bedtools/-/compare/9889a387f292fabdb790f306a905cf805a56e55b...438dfd51ae9fcd6429bff4bdef1328ae54b98aab
--
View it on GitLab: https://salsa.debian.org/med-team/bedtools/-/compare/9889a387f292fabdb790f306a905cf805a56e55b...438dfd51ae9fcd6429bff4bdef1328ae54b98aab
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