Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
1cd7c935 by Andreas Tille at 2020-09-01T13:45:18+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,68 +1,69 @@
-Last-Update: Tue, 01 Sep 2020 01:42:03 +0000
+Last-Update: Tue, 01 Sep 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 163 | {imaging,covid-19} |
- orthanc | 92 | {practice,covid-19,imaging} |
- orthanc-wsi | 47 | {his,laboratory,covid-19,imaging,practice,oncology} |
- gdcm | 35 | {imaging-dev} |
- dicom3tools | 25 | {imaging} |
- dicomscope | 23 | {imaging} |
- htsjdk | 22 | {bio-dev} |
+ dcmtk | 165 | {imaging,covid-19} |
+ orthanc | 93 | {practice,covid-19,imaging} |
+ orthanc-wsi | 48 | {his,laboratory,covid-19,imaging,practice,oncology} |
+ gdcm | 34 | {imaging-dev} |
+ dicomscope | 24 | {imaging} |
+ dicom3tools | 23 | {imaging} |
+ htsjdk | 21 | {bio-dev} |
gnumed-server | 20 | {covid-19,practice} |
- gdcm | 15 | {covid-19,imaging} |
- ngs-sdk | 13 | {bio-dev} |
+ gdcm | 14 | {covid-19,imaging} |
gdcm | 12 | {imaging-dev} |
- invesalius | 12 | {imaging} |
- dcm2niix | 11 | {imaging} |
- insighttoolkit4 | 11 | {imaging-dev} |
- adun.app | 10 | {bio} |
+ invesalius | 11 | {imaging} |
+ ngs-sdk | 11 | {bio-dev} |
+ dcm2niix | 10 | {imaging} |
minc-tools | 10 | {imaging} |
openslide | 10 | {imaging} |
+ adun.app | 9 | {bio} |
+ insighttoolkit4 | 9 | {imaging-dev} |
ngs-sdk | 9 | {bio-dev} |
- nifticlib | 9 | {imaging-dev} |
- plastimatch | 9 | {imaging} |
+ nifticlib | 9 | {imaging} |
fastlink | 8 | {bio,cloud} |
- librg-utils-perl | 8 | {bio} |
- melting | 8 | {cloud,bio} |
- nifticlib | 8 | {imaging} |
- pixelmed | 8 | {imaging} |
+ nifticlib | 8 | {imaging-dev} |
+ plastimatch | 8 | {imaging} |
treeview | 8 | {bio,bio-phylogeny} |
- obitools | 7 | {bio} |
+ librg-utils-perl | 7 | {bio} |
+ melting | 7 | {cloud,bio} |
orthanc-webviewer | 7 | {imaging} |
- biojava-live | 6 | {bio-dev} |
+ pixelmed | 7 | {imaging} |
biosig4c++ | 6 | {physics,imaging} |
dicompyler | 6 | {oncology} |
ea-utils | 6 | {bio} |
- jebl2 | 6 | {bio-dev} |
king | 6 | {typesetting,imaging} |
libdivsufsort | 6 | {bio-dev} |
- libminc | 6 | {imaging-dev} |
multiqc | 6 | {bio,covid-19} |
+ obitools | 6 | {bio} |
pymia | 6 | {imaging-dev} |
- sibsim4 | 6 | {bio,cloud} |
- vtk-dicom | 6 | {imaging} |
bart-view | 5 | {imaging} |
+ biojava-live | 5 | {bio-dev} |
ecopcr | 5 | {bio} |
edtsurf | 5 | {bio} |
ipig | 5 | {bio} |
+ jebl2 | 5 | {bio-dev} |
+ libminc | 5 | {imaging-dev} |
libncl | 5 | {bio} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
- mipe | 5 | {cloud,bio} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
phyutility | 5 | {bio,cloud} |
piler | 5 | {bio} |
predictprotein | 5 | {bio} |
rdp-alignment | 5 | {bio} |
rdp-classifier | 5 | {bio} |
+ saint | 5 | {bio} |
salmon | 5 | {covid-19,bio} |
+ sibsim4 | 5 | {bio,cloud} |
spread-phy | 5 | {bio-phylogeny,bio} |
+ vtk-dicom | 5 | {imaging} |
anfo | 4 | {cloud,bio} |
busco | 4 | {bio,covid-19} |
embassy-domainatrix | 4 | {cloud,bio} |
embassy-domalign | 4 | {cloud,bio} |
embassy-domsearch | 4 | {cloud,bio} |
mauve-aligner | 4 | {bio} |
+ mipe | 4 | {cloud,bio} |
mrs | 4 | {bio} |
neobio | 4 | {cloud,bio} |
orthanc-mysql | 4 | {imaging} |
@@ -70,44 +71,40 @@ Last-Update: Tue, 01 Sep 2020 01:42:03 +0000
paraclu | 4 | {bio,cloud} |
perm | 4 | {cloud,bio} |
proalign | 4 | {bio,bio-phylogeny} |
- relion | 4 | {bio} |
- saint | 4 | {bio} |
+ radiant | 4 | {bio} |
stacks | 4 | {bio} |
staden | 4 | {bio} |
zalign | 4 | {cloud,bio} |
alter-sequence-alignment | 3 | {bio} |
arden | 3 | {cloud,bio} |
- beast2-mcmc | 3 | {bio} |
beast-mcmc | 3 | {bio,bio-phylogeny} |
- biomaj3-cli | 3 | {cloud} |
brig | 3 | {bio} |
dindel | 3 | {bio} |
elastix | 3 | {imaging} |
fastml | 3 | {bio} |
fsm-lite | 3 | {bio} |
- gatb-core | 3 | {bio} |
- jellyfish1 | 3 | {bio} |
jmodeltest | 3 | {bio-phylogeny,bio} |
- lagan | 3 | {bio} |
libpal-java | 3 | {bio-dev} |
metaphlan2 | 3 | {bio} |
microbegps | 3 | {bio} |
+ nutsqlite | 3 | {tools} |
oscar | 3 | {data,practice,tools} |
phast | 3 | {bio} |
phybin | 3 | {bio} |
placnet | 3 | {bio} |
prime-phylo | 3 | {cloud,bio} |
prottest | 3 | {bio,bio-phylogeny} |
- radiant | 3 | {bio} |
+ relion | 3 | {bio} |
rtax | 3 | {cloud,bio} |
scrm | 3 | {bio} |
sga | 3 | {bio} |
spaced | 3 | {bio} |
sprai | 3 | {bio} |
suitename | 3 | {bio} |
- tracetuner | 3 | {bio} |
+ surankco | 3 | {bio} |
assemblytics | 2 | {bio} |
- biomaj3-daemon | 2 | {bio} |
+ beast2-mcmc | 2 | {bio} |
+ biomaj3-cli | 2 | {cloud} |
bio-tradis | 2 | {bio,bio-dev} |
bitseq | 2 | {bio} |
blasr | 2 | {bio-ngs,bio} |
@@ -115,17 +112,17 @@ Last-Update: Tue, 01 Sep 2020 01:42:03 +0000
clonalframeml | 2 | {bio,covid-19} |
clonalorigin | 2 | {bio} |
cufflinks | 2 | {bio,cloud} |
- delly | 2 | {covid-19,bio} |
- estscan | 2 | {bio} |
+ gatb-core | 2 | {bio} |
getdata | 2 | {bio} |
- ghmm | 2 | {bio} |
hinge | 2 | {bio} |
+ jellyfish1 | 2 | {bio} |
+ lagan | 2 | {bio} |
lamarc | 2 | {bio} |
libctapimkt | 2 | {practice} |
+ libsbml | 2 | {bio-dev} |
logol | 2 | {bio} |
mhap | 2 | {bio-ngs,bio} |
murasaki | 2 | {bio} |
- nutsqlite | 2 | {tools} |
patman | 2 | {bio} |
pbdagcon | 2 | {bio} |
pscan-chip | 2 | {bio} |
@@ -134,38 +131,38 @@ Last-Update: Tue, 01 Sep 2020 01:42:03 +0000
rambo-k | 2 | {bio} |
relion | 2 | {bio} |
runcircos-gui | 2 | {bio} |
- samblaster | 2 | {covid-19,bio} |
- segemehl | 2 | {bio} |
seqsero | 2 | {bio} |
soapaligner | 2 | {bio} |
soapsnp | 2 | {bio} |
- surankco | 2 | {bio} |
- tvc | 2 | {bio} |
+ tracetuner | 2 | {bio} |
velvetoptimiser | 2 | {bio} |
- yaha | 2 | {bio} |
acedb | 1 | {cloud,bio} |
+ biomaj3-daemon | 1 | {bio} |
biosig4c++ | 1 | {physics,imaging-dev} |
blimps | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
+ delly | 1 | {covid-19,bio} |
dextractor | 1 | {bio,covid-19} |
embassy-phylip | 1 | {cloud,bio} |
emboss-explorer | 1 | {bio} |
+ estscan | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
- htscodecs | 1 | {covid-19,bio-dev} |
+ ghmm | 1 | {bio} |
intake | 1 | {bio-dev,bio} |
- libsbml | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
- plasmidseeker | 1 | {bio} |
q2templates | 1 | {bio} |
+ samblaster | 1 | {covid-19,bio} |
samtools-legacy | 1 | {bio-dev} |
+ segemehl | 1 | {bio} |
seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
sight | 1 | {imaging} |
simpleitk | 1 | {imaging-dev} |
- trace2dbest | 1 | {bio} |
+ tvc | 1 | {bio} |
vienna-rna | 1 | {covid-19,bio} |
+ yaha | 1 | {bio} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
bamkit | 0 | {covid-19,bio} |
@@ -179,6 +176,7 @@ Last-Update: Tue, 01 Sep 2020 01:42:03 +0000
ctn | 0 | {imaging-dev} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
+ htscodecs | 0 | {covid-19,bio-dev} |
kma | 0 | {bio} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
@@ -226,6 +224,7 @@ Last-Update: Tue, 01 Sep 2020 01:42:03 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
+ plasmidseeker | 0 | {bio} |
pplacer | 0 | {covid-19,bio,bio-phylogeny} |
relion | 0 | {bio} |
relion | 0 | {bio-dev} |
@@ -242,6 +241,7 @@ Last-Update: Tue, 01 Sep 2020 01:42:03 +0000
stringtie | 0 | {bio,covid-19} |
thesias | 0 | {covid-19,bio} |
tophat-recondition | 0 | {bio,covid-19} |
+ trace2dbest | 0 | {bio} |
varna | 0 | {bio} |
varscan | 0 | {bio,covid-19} |
vtk-dicom | 0 | {imaging-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/1cd7c9352e41abb5378b9d23800455ba7df8f55a
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/1cd7c9352e41abb5378b9d23800455ba7df8f55a
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