[med-svn] [Git][med-team/mmseqs2][master] 10 commits: exclude the upstream copy of simde

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / mmseqs2


Commits:
bfcab210 by Michael R. Crusoe at 2020-09-01T14:38:16+02:00
exclude the upstream copy of simde

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7c3b24bb by Michael R. Crusoe at 2020-09-01T14:39:02+02:00
routine-update: New upstream version

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14a536b2 by Michael R. Crusoe at 2020-09-01T14:39:06+02:00
New upstream version 12-113e3+ds
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c9195833 by Michael R. Crusoe at 2020-09-01T14:39:26+02:00
Update upstream source from tag 'upstream/12-113e3+ds'

Update to upstream version '12-113e3+ds'
with Debian dir 8576c4de223741dcd7a804b037ec4852d039d625
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f89833bd by Michael R. Crusoe at 2020-09-01T14:40:49+02:00
refresh patches

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0eb4c85a by Michael R. Crusoe at 2020-09-01T14:40:54+02:00
Freshen debian/copyright

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033fd78d by Michael R. Crusoe at 2020-09-01T14:40:58+02:00
ensure that -march=native isn't used

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1da3e26c by Michael R. Crusoe at 2020-09-01T15:22:44+02:00
debian/rules: Ensure all for-loops fail if there is an error

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f66720a2 by Michael R. Crusoe at 2020-09-01T15:36:57+02:00
Use $foreach loop for better & safer parallelism

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79273906 by Michael R. Crusoe at 2020-09-01T16:08:23+02:00
i386 doesn't work yet

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30 changed files:

- .travis.yml
- CMakeLists.txt
- Dockerfile
- README.md
- azure-pipelines.yml
- cmake/CheckSSEFeatures.cmake
- + cmake/FindAtomic.cmake
- data/resources/CMakeLists.txt
- + data/resources/result_viz_prelude.html.zst
- data/workflow/CMakeLists.txt
- data/workflow/blastn.sh
- data/workflow/blastp.sh
- data/workflow/blastpgp.sh
- data/workflow/cascaded_clustering.sh
- data/workflow/clustering.sh
- data/workflow/createindex.sh
- data/workflow/createtaxdb.sh
- data/workflow/databases.sh
- data/workflow/easycluster.sh
- + data/workflow/easyrbh.sh
- data/workflow/easysearch.sh
- data/workflow/easytaxonomy.sh
- data/workflow/enrich.sh
- data/workflow/linclust.sh
- data/workflow/linsearch.sh
- data/workflow/multihitdb.sh
- data/workflow/multihitsearch.sh
- + data/workflow/nucleotide_clustering.sh
- data/workflow/rbh.sh
- data/workflow/searchslicedtargetprofile.sh


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/mmseqs2/-/compare/87d06eb03fa6fb1ea7f9b5977febc90f4c409cf2...7927390603351bc43634d32e1a36e594db33b510

-- 
View it on GitLab: https://salsa.debian.org/med-team/mmseqs2/-/compare/87d06eb03fa6fb1ea7f9b5977febc90f4c409cf2...7927390603351bc43634d32e1a36e594db33b510
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