[med-svn] [Git][med-team/igv][master] 9 commits: Revert "Update upstream source from tag 'upstream/2.8.10+dfsg'"

[Pierre Gruet]

Pierre Gruet pushed to branch master at Debian Med / igv


Commits:
2d136846 by Pierre Gruet at 2020-08-29T15:49:35+02:00
Revert "Update upstream source from tag 'upstream/2.8.10+dfsg'"

This reverts commit 61632fccf2902363cc801e8e25b98b888a787087, reversing
changes made to 14c8d69031f3636747cf9885ddfe8336a11bc85a.

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dff18438 by Pierre Gruet at 2020-08-29T19:27:56+02:00
Bringing back changelog to version 2.6.3+dfsg

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9f98cb18 by Pierre Gruet at 2020-08-29T19:28:00+02:00
Revert "No need to fiddle around with build.gradle files any more"

This reverts commit 9820402dcd69d14b3647b9c83bc2bfc850179994.

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383eb0dd by Pierre Gruet at 2020-09-01T21:00:06+02:00
Updating build directory to Java 11

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22a30171 by Pierre Gruet at 2020-09-01T21:00:39+02:00
Add runtime dependency to batik

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20ac77ee by Pierre Gruet at 2020-09-01T21:01:34+02:00
Adapting paths for gradle as we use Debian libs

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e7c6cf9e by Pierre Gruet at 2020-09-01T21:02:30+02:00
Adapting the code, written for an old htsjdk version

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529655a2 by Pierre Gruet at 2020-09-01T21:03:23+02:00
Skipping build-time tests that require an access to network

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26378250 by Pierre Gruet at 2020-09-01T22:19:35+02:00
Updating changelog

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30 changed files:

- .gitignore
- .travis.yml
- IGV.iml
- README.md
- build.gradle
- + build_java11.gradle
- debian/changelog
- debian/control
- debian/igv.jlibs
- + debian/patches/gradle_dependencies.patch
- + debian/patches/handle_old_htsjdk.patch
- debian/patches/series
- + debian/patches/skip_tests_network.patch
- debian/rules
- − docs/AWS.md
- genomes/db/hg19/hg19_annotations.xml
- genomes/db/hg19/hg19_dataServerRegistry.txt
- − genomes/db/hg19/tcga_stddata__2016_01_28.xml
- − genomes/db/hg19/tutorials.hg19.xml
- genomes/genomes.txt
- gradle/wrapper/gradle-wrapper.jar
- gradle/wrapper/gradle-wrapper.properties
- gradlew
- gradlew.bat
- + lib/AbsoluteLayout.jar
- + lib/goby-io-igv-1.1.jar
- + lib/jide-common-3.7.3.jar
- − scripts/igv-launcher.bat
- scripts/igv.bat
- scripts/igv.command


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/9820402dcd69d14b3647b9c83bc2bfc850179994...263782504d1c7a122d9a329e7a0fa318367deaa0

-- 
View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/9820402dcd69d14b3647b9c83bc2bfc850179994...263782504d1c7a122d9a329e7a0fa318367deaa0
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