Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
b3c60e91 by Andreas Tille at 2020-09-03T13:45:18+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,144 +1,148 @@
-Last-Update: Thu, 03 Sep 2020 01:42:03 +0000
+Last-Update: Thu, 03 Sep 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 160 | {imaging,covid-19} |
orthanc | 90 | {practice,covid-19,imaging} |
- orthanc-wsi | 47 | {his,laboratory,covid-19,imaging,practice,oncology} |
+ orthanc-wsi | 48 | {his,laboratory,covid-19,imaging,practice,oncology} |
gdcm | 34 | {imaging-dev} |
- dicom3tools | 24 | {imaging} |
+ dicom3tools | 26 | {imaging} |
dicomscope | 23 | {imaging} |
- htsjdk | 21 | {bio-dev} |
- gnumed-server | 20 | {covid-19,practice} |
- gdcm | 15 | {covid-19,imaging} |
+ htsjdk | 22 | {bio-dev} |
+ gnumed-server | 19 | {covid-19,practice} |
+ gdcm | 16 | {covid-19,imaging} |
+ invesalius | 12 | {imaging} |
+ minc-tools | 12 | {imaging} |
dcm2niix | 11 | {imaging} |
gdcm | 11 | {imaging-dev} |
- invesalius | 11 | {imaging} |
- minc-tools | 11 | {imaging} |
ngs-sdk | 11 | {bio-dev} |
- ngs-sdk | 10 | {bio-dev} |
- insighttoolkit4 | 9 | {imaging-dev} |
+ insighttoolkit4 | 10 | {imaging-dev} |
+ openslide | 10 | {imaging} |
+ adun.app | 9 | {bio} |
+ fastlink | 9 | {bio,cloud} |
+ ngs-sdk | 9 | {bio-dev} |
nifticlib | 9 | {imaging} |
- openslide | 9 | {imaging} |
- plastimatch | 9 | {imaging} |
- adun.app | 8 | {bio} |
- fastlink | 8 | {bio,cloud} |
- nifticlib | 8 | {imaging-dev} |
- pixelmed | 8 | {imaging} |
- treeview | 8 | {bio,bio-phylogeny} |
+ nifticlib | 9 | {imaging-dev} |
+ pixelmed | 9 | {imaging} |
+ treeview | 9 | {bio,bio-phylogeny} |
+ librg-utils-perl | 8 | {bio} |
+ melting | 8 | {cloud,bio} |
+ obitools | 8 | {bio} |
+ plastimatch | 8 | {imaging} |
+ biosig4c++ | 7 | {physics,imaging} |
dicompyler | 7 | {oncology} |
- librg-utils-perl | 7 | {bio} |
- melting | 7 | {cloud,bio} |
- obitools | 7 | {bio} |
+ ea-utils | 7 | {bio} |
+ king | 7 | {typesetting,imaging} |
+ libncl | 7 | {bio} |
orthanc-webviewer | 7 | {imaging} |
- biosig4c++ | 6 | {physics,imaging} |
- ea-utils | 6 | {bio} |
- king | 6 | {typesetting,imaging} |
+ biojava-live | 6 | {bio-dev} |
+ edtsurf | 6 | {bio} |
+ ipig | 6 | {bio} |
+ jebl2 | 6 | {bio-dev} |
libdivsufsort | 6 | {bio-dev} |
- libncl | 6 | {bio} |
multiqc | 6 | {bio,covid-19} |
pymia | 6 | {imaging-dev} |
vtk-dicom | 6 | {imaging} |
+ anfo | 5 | {cloud,bio} |
bart-view | 5 | {imaging} |
- biojava-live | 5 | {bio-dev} |
ecopcr | 5 | {bio} |
- edtsurf | 5 | {bio} |
- ipig | 5 | {bio} |
- jebl2 | 5 | {bio-dev} |
+ embassy-domalign | 5 | {cloud,bio} |
+ embassy-domsearch | 5 | {cloud,bio} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
+ mauve-aligner | 5 | {bio} |
+ mipe | 5 | {cloud,bio} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
+ phast | 5 | {bio} |
phyutility | 5 | {bio,cloud} |
piler | 5 | {bio} |
predictprotein | 5 | {bio} |
+ radiant | 5 | {bio} |
rdp-alignment | 5 | {bio} |
rdp-classifier | 5 | {bio} |
saint | 5 | {bio} |
salmon | 5 | {covid-19,bio} |
sibsim4 | 5 | {bio,cloud} |
spread-phy | 5 | {bio-phylogeny,bio} |
- anfo | 4 | {cloud,bio} |
+ staden | 5 | {bio} |
+ zalign | 5 | {cloud,bio} |
+ alter-sequence-alignment | 4 | {bio} |
+ arden | 4 | {cloud,bio} |
+ beast-mcmc | 4 | {bio,bio-phylogeny} |
busco | 4 | {bio,covid-19} |
embassy-domainatrix | 4 | {cloud,bio} |
- embassy-domalign | 4 | {cloud,bio} |
- embassy-domsearch | 4 | {cloud,bio} |
+ fastml | 4 | {bio} |
+ fsm-lite | 4 | {bio} |
+ jmodeltest | 4 | {bio-phylogeny,bio} |
libminc | 4 | {imaging-dev} |
- mauve-aligner | 4 | {bio} |
- mipe | 4 | {cloud,bio} |
- mrs | 4 | {bio} |
+ libpal-java | 4 | {bio-dev} |
+ metaphlan2 | 4 | {bio} |
+ microbegps | 4 | {bio} |
neobio | 4 | {cloud,bio} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
paraclu | 4 | {bio,cloud} |
perm | 4 | {cloud,bio} |
- phast | 4 | {bio} |
+ prime-phylo | 4 | {cloud,bio} |
proalign | 4 | {bio,bio-phylogeny} |
- radiant | 4 | {bio} |
+ sprai | 4 | {bio} |
stacks | 4 | {bio} |
- staden | 4 | {bio} |
- zalign | 4 | {cloud,bio} |
- alter-sequence-alignment | 3 | {bio} |
- arden | 3 | {cloud,bio} |
- beast-mcmc | 3 | {bio,bio-phylogeny} |
+ assemblytics | 3 | {bio} |
+ bio-tradis | 3 | {bio,bio-dev} |
+ bitseq | 3 | {bio} |
+ blasr | 3 | {bio-ngs,bio} |
brig | 3 | {bio} |
+ clonalorigin | 3 | {bio} |
dindel | 3 | {bio} |
elastix | 3 | {imaging} |
- fastml | 3 | {bio} |
- fsm-lite | 3 | {bio} |
- jmodeltest | 3 | {bio-phylogeny,bio} |
- libpal-java | 3 | {bio-dev} |
+ gatb-core | 3 | {bio} |
+ jellyfish1 | 3 | {bio} |
+ lagan | 3 | {bio} |
+ lamarc | 3 | {bio} |
libsbml | 3 | {bio-dev} |
- metaphlan2 | 3 | {bio} |
- microbegps | 3 | {bio} |
+ logol | 3 | {bio} |
+ mhap | 3 | {bio-ngs,bio} |
+ mrs | 3 | {bio} |
+ murasaki | 3 | {bio} |
nutsqlite | 3 | {tools} |
oscar | 3 | {data,practice,tools} |
phybin | 3 | {bio} |
placnet | 3 | {bio} |
- prime-phylo | 3 | {cloud,bio} |
prottest | 3 | {bio,bio-phylogeny} |
+ pscan-chip | 3 | {bio} |
+ quorum | 3 | {bio} |
relion | 3 | {bio} |
rtax | 3 | {cloud,bio} |
scrm | 3 | {bio} |
sga | 3 | {bio} |
spaced | 3 | {bio} |
- sprai | 3 | {bio} |
suitename | 3 | {bio} |
surankco | 3 | {bio} |
- assemblytics | 2 | {bio} |
+ tracetuner | 3 | {bio} |
beast2-mcmc | 2 | {bio} |
biomaj3-cli | 2 | {cloud} |
- bio-tradis | 2 | {bio,bio-dev} |
- bitseq | 2 | {bio} |
- blasr | 2 | {bio-ngs,bio} |
+ biomaj3-daemon | 2 | {bio} |
canu | 2 | {bio} |
clonalframeml | 2 | {bio,covid-19} |
- clonalorigin | 2 | {bio} |
cufflinks | 2 | {bio,cloud} |
- gatb-core | 2 | {bio} |
+ estscan | 2 | {bio} |
gatb-core | 2 | {bio-dev} |
getdata | 2 | {bio} |
+ ghmm | 2 | {bio} |
hinge | 2 | {bio} |
- jellyfish1 | 2 | {bio} |
- lagan | 2 | {bio} |
- lamarc | 2 | {bio} |
libctapimkt | 2 | {practice} |
- logol | 2 | {bio} |
- mhap | 2 | {bio-ngs,bio} |
- murasaki | 2 | {bio} |
patman | 2 | {bio} |
pbdagcon | 2 | {bio} |
- pscan-chip | 2 | {bio} |
qcumber | 2 | {bio} |
- quorum | 2 | {bio} |
rambo-k | 2 | {bio} |
relion | 2 | {bio} |
runcircos-gui | 2 | {bio} |
+ segemehl | 2 | {bio} |
seqsero | 2 | {bio} |
soapaligner | 2 | {bio} |
soapsnp | 2 | {bio} |
- tracetuner | 2 | {bio} |
velvetoptimiser | 2 | {bio} |
+ yaha | 2 | {bio} |
acedb | 1 | {cloud,bio} |
- biomaj3-daemon | 1 | {bio} |
biosig4c++ | 1 | {physics,imaging-dev} |
blimps | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
@@ -146,8 +150,6 @@ Last-Update: Thu, 03 Sep 2020 01:42:03 +0000
dextractor | 1 | {bio,covid-19} |
embassy-phylip | 1 | {cloud,bio} |
emboss-explorer | 1 | {bio} |
- estscan | 1 | {bio} |
- ghmm | 1 | {bio} |
intake | 1 | {bio-dev,bio} |
libvistaio | 1 | {imaging-dev} |
openslide | 1 | {imaging-dev} |
@@ -155,14 +157,12 @@ Last-Update: Thu, 03 Sep 2020 01:42:03 +0000
q2templates | 1 | {bio} |
samblaster | 1 | {covid-19,bio} |
samtools-legacy | 1 | {bio-dev} |
- segemehl | 1 | {bio} |
seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
sight | 1 | {imaging} |
simpleitk | 1 | {imaging-dev} |
tvc | 1 | {bio} |
vienna-rna | 1 | {covid-19,bio} |
- yaha | 1 | {bio} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
bamkit | 0 | {covid-19,bio} |
@@ -226,8 +226,8 @@ Last-Update: Thu, 03 Sep 2020 01:42:03 +0000
pilercr | 0 | {bio} |
plasmidseeker | 0 | {bio} |
pplacer | 0 | {covid-19,bio,bio-phylogeny} |
- relion | 0 | {bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
scrappie | 0 | {covid-19,bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b3c60e9120c6ef410459fb783f7ecc9dd4926ae0
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b3c60e9120c6ef410459fb783f7ecc9dd4926ae0
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