[med-svn] [Git][med-team/picard-tools][upstream] New upstream version 2.23.4+dfsg

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / picard-tools


Commits:
01c5415a by Andreas Tille at 2020-09-10T17:10:08+02:00
New upstream version 2.23.4+dfsg
- - - - -


30 changed files:

- src/main/java/picard/analysis/AlignmentSummaryMetrics.java
- src/main/java/picard/analysis/AlignmentSummaryMetricsCollector.java
- src/main/java/picard/analysis/CollectAlignmentSummaryMetrics.java
- src/main/java/picard/analysis/CollectInsertSizeMetrics.java
- src/main/java/picard/analysis/CollectMultipleMetrics.java
- src/main/java/picard/analysis/WgsMetrics.java
- src/main/java/picard/analysis/artifacts/CollectSequencingArtifactMetrics.java
- src/main/java/picard/fingerprint/CheckFingerprint.java
- src/main/java/picard/fingerprint/CrosscheckFingerprints.java
- src/main/java/picard/fingerprint/ExtractFingerprint.java
- src/main/java/picard/fingerprint/FingerprintChecker.java
- src/main/java/picard/metrics/MultiLevelCollector.java
- src/main/java/picard/sam/AbstractAlignmentMerger.java
- src/main/java/picard/sam/MergeBamAlignment.java
- src/main/java/picard/util/IntervalListToBed.java
- src/main/java/picard/vcf/VcfToIntervalList.java
- + src/main/resources/picard/analysis/readLengthDistribution.R
- src/test/java/picard/analysis/CollectAlignmentSummaryMetricsTest.java
- src/test/java/picard/analysis/CollectMultipleMetricsTest.java
- src/test/java/picard/analysis/CollectOxoGMetricsTest.java
- src/test/java/picard/analysis/CollectWgsMetricsTest.java
- src/test/java/picard/analysis/MultiLevelCollectorTest.java
- src/test/java/picard/analysis/artifacts/ConvertSequencingArtifactToOxoGTest.java
- src/test/java/picard/cmdline/CommandLineProgramTest.java
- src/test/java/picard/fingerprint/FingerprintCheckerTest.java
- + src/test/java/picard/fingerprint/LiftOverHaplotypeMapTest.java
- src/test/java/picard/sam/AbstractAlignmentMergerTest.java
- src/test/java/picard/sam/AddCommentsToBamTest.java
- src/test/java/picard/sam/FilterSamReadsTest.java
- src/test/java/picard/util/IntervalListToBedTest.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/commit/01c5415aa6a32988d26a2e2902dada15922b5d2f

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View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/commit/01c5415aa6a32988d26a2e2902dada15922b5d2f
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