[med-svn] [Git][med-team/edtsurf][master] 6 commits: Remove autopkgtest reference files

[Pranav Ballaney]

Pranav Ballaney pushed to branch master at Debian Med / edtsurf


Commits:
f2208435 by Pranav Ballaney at 2020-09-15T18:02:58+05:30
Remove autopkgtest reference files

- - - - -
ebb68b8c by Pranav Ballaney at 2020-09-15T18:03:14+05:30
Use checksums for autopkgtest verification

- - - - -
e3b8755e by Pranav Ballaney at 2020-09-15T18:08:39+05:30
Improve autopkgtests

- - - - -
fd44bc9a by Pranav Ballaney at 2020-09-15T18:09:41+05:30
Update docs

- - - - -
ffbc0f65 by Pranav Ballaney at 2020-09-15T18:14:43+05:30
Update changelog

- - - - -
3d086fd6 by Pranav Ballaney at 2020-09-15T18:15:21+05:30
routine-update: Ready to upload to unstable

- - - - -


8 changed files:

- debian/README.test
- debian/changelog
- debian/docs
- debian/edtsurf-examples.install
- − debian/tests/README.test_data
- − debian/tests/ref/4we2-cav.pdb.gz
- − debian/tests/ref/4we2.ply.gz
- debian/tests/run-unit-test


Changes:

=====================================
debian/README.test
=====================================
@@ -6,3 +6,8 @@ This package can be tested by running the provided test:
     sh run-unit-test
 
 in order to confirm its integrity.
+
+Notes on files used for testing this package.
+─────────────────────────────────────────────
+
+debian/data/4we2.pdb was obtained from https://www.rcsb.org/structure/4WE2
\ No newline at end of file


=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+edtsurf (0.2009-9) unstable; urgency=medium
+
+  * Remove autopkgtest reference files
+  * Use checksums for autopkgtest verification
+  * Improve autopkgtests
+  * Update docs
+
+ -- Pranav Ballaney <ballaneypranav at gmail.com>  Tue, 15 Sep 2020 18:15:05 +0530
+
 edtsurf (0.2009-8) unstable; urgency=medium
 
   * do not hard code the build architecture compiler in upstream Makefile


=====================================
debian/docs
=====================================
@@ -1,3 +1,2 @@
 debian/README*
-debian/tests/README*
 debian/tests/run-unit-test
\ No newline at end of file


=====================================
debian/edtsurf-examples.install
=====================================
@@ -1,2 +1 @@
-debian/tests/data /usr/share/doc/edtsurf/examples/
-debian/tests/ref  /usr/share/doc/edtsurf/examples/
\ No newline at end of file
+debian/tests/data /usr/share/doc/edtsurf/examples/
\ No newline at end of file


=====================================
debian/tests/README.test_data deleted
=====================================
@@ -1,2 +0,0 @@
-data/4we2.pdb was obtained from https://www.rcsb.org/structure/4WE2
-ref/* files were obtained by running 4we2.pdb through EDTSurf as shown in Test 1 in run-unit-test
\ No newline at end of file


=====================================
debian/tests/ref/4we2-cav.pdb.gz deleted
=====================================
Binary files a/debian/tests/ref/4we2-cav.pdb.gz and /dev/null differ


=====================================
debian/tests/ref/4we2.ply.gz deleted
=====================================
Binary files a/debian/tests/ref/4we2.ply.gz and /dev/null differ


=====================================
debian/tests/run-unit-test
=====================================
@@ -24,28 +24,42 @@ cd data
 
 echo -e "\e[93m\e[1mTest 1\e[0m"
 EDTSurf -i 4we2.pdb
-cd ..
-echo hello
-diff data/4we2.ply ref/4we2.ply
-echo hello2
-diff data/4we2-cav.pdb ref/4we2-cav.pdb
+
+echo "5a8f743a66963e9939773cce4dd68063  4we2-cav.pdb" > checksums
+echo "1e12bc9a1180027990d7b16497af051b  4we2.ply" >> checksums
+md5sum --check checksums
+
 echo -e "\e[92m\e[1mPassed\e[0m"
 echo
 
-cd data
-
 echo -e "\e[93m\e[1mTest 2\e[0m"
 EDTSurf -i 4we2.pdb -t 2 -o 4we2-vcmc-ms
+
+echo "5a8f743a66963e9939773cce4dd68063  4we2-vcmc-ms-cav.pdb" > checksums
+echo "1e12bc9a1180027990d7b16497af051b  4we2-vcmc-ms.ply" >> checksums
+md5sum --check checksums
+
 echo -e "\e[92m\e[1mPassed\e[0m"
 echo
 
 echo -e "\e[93m\e[1mTest 3\e[0m"
 EDTSurf -i 4we2.pdb -s 1 -t 1 -o 4we2-mc-vws
+
+echo "6c58df9e481d7acc476ac49b05ccf71a  4we2-mc-vws-cav.pdb" > checksums
+echo "3fcf6ee03320d65165f6b69829184523  4we2-mc-vws.ply" >> checksums
+md5sum --check checksums
+
 echo -e "\e[92m\e[1mPassed\e[0m"
 echo
 
 echo -e "\e[93m\e[1mTest 4\e[0m"
 EDTSurf -i 4we2.pdb -s 2 -t 2 -c 3 -o 4we2-sas-vcmc-chain
+
+echo "e53d8f051ab37ddb2e8ea7f91b576046  4we2-sas-vcmc-chain.asa" > checksums
+echo "a5c9f8506b7a19598abdd4d723b659d8  4we2-sas-vcmc-chain-cav.pdb" >> checksums
+echo "840499d9781b146e0144fdb597c73a8e  4we2-sas-vcmc-chain.ply" >> checksums
+md5sum --check checksums
+
 echo -e "\e[92m\e[1mPassed\e[0m"
 echo
 



View it on GitLab: https://salsa.debian.org/med-team/edtsurf/-/compare/b51c9c7d1b7b4c6db163aa144b97b03f611458e2...3d086fd61169177d90e6d3f132b3fca2d7791561

-- 
View it on GitLab: https://salsa.debian.org/med-team/edtsurf/-/compare/b51c9c7d1b7b4c6db163aa144b97b03f611458e2...3d086fd61169177d90e6d3f132b3fca2d7791561
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