Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
1d11ec4c by Andreas Tille at 2020-09-18T13:45:13+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,55 +1,53 @@
-Last-Update: Fri, 18 Sep 2020 01:42:03 +0000
+Last-Update: Fri, 18 Sep 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 166 | {imaging,covid-19} |
- orthanc | 94 | {practice,covid-19,imaging} |
+ dcmtk | 165 | {imaging,covid-19} |
+ orthanc | 95 | {practice,covid-19,imaging} |
orthanc-wsi | 50 | {his,laboratory,covid-19,imaging,practice,oncology} |
gdcm | 41 | {imaging-dev} |
htsjdk | 28 | {bio-dev} |
dicom3tools | 23 | {imaging} |
dicomscope | 22 | {imaging} |
- gnumed-server | 19 | {covid-19,practice} |
+ gnumed-server | 18 | {covid-19,practice} |
adun.app | 13 | {bio} |
gdcm | 13 | {imaging-dev} |
gdcm | 13 | {covid-19,imaging} |
invesalius | 13 | {imaging} |
- ngs-sdk | 13 | {bio-dev} |
+ ngs-sdk | 12 | {bio-dev} |
+ pixelmed | 11 | {imaging} |
dcm2niix | 10 | {imaging} |
- melting | 10 | {cloud,bio} |
minc-tools | 10 | {imaging} |
openslide | 10 | {imaging} |
- pixelmed | 10 | {imaging} |
dicompyler | 9 | {oncology} |
- fastlink | 9 | {bio,cloud} |
+ melting | 9 | {cloud,bio} |
nifticlib | 9 | {imaging-dev} |
+ nifticlib | 9 | {imaging} |
ea-utils | 8 | {bio} |
insighttoolkit4 | 8 | {imaging-dev} |
- king | 8 | {typesetting,imaging} |
multiqc | 8 | {bio,covid-19} |
ngs-sdk | 8 | {bio-dev} |
orthanc-webviewer | 8 | {imaging} |
plastimatch | 8 | {imaging} |
treeview | 8 | {bio,bio-phylogeny} |
+ king | 7 | {typesetting,imaging} |
libncl | 7 | {bio} |
librg-utils-perl | 7 | {bio} |
- nifticlib | 7 | {imaging} |
staden | 7 | {bio} |
- arden | 6 | {cloud,bio} |
biojava-live | 6 | {bio-dev} |
biosig4c++ | 6 | {physics,imaging} |
- ipig | 6 | {bio} |
+ fastlink | 6 | {bio,cloud} |
jebl2 | 6 | {bio-dev} |
libdivsufsort | 6 | {bio-dev} |
obitools | 6 | {bio} |
salmon | 6 | {covid-19,bio} |
anfo | 5 | {cloud,bio} |
+ arden | 5 | {cloud,bio} |
bart-view | 5 | {imaging} |
busco | 5 | {bio,covid-19} |
- ecopcr | 5 | {bio} |
embassy-domalign | 5 | {cloud,bio} |
embassy-domsearch | 5 | {cloud,bio} |
- librdp-taxonomy-tree-java | 5 | {bio-dev} |
+ ipig | 5 | {bio} |
mauve-aligner | 5 | {bio} |
microbegps | 5 | {bio} |
mipe | 5 | {cloud,bio} |
@@ -57,16 +55,14 @@ Last-Update: Fri, 18 Sep 2020 01:42:03 +0000
orthanc-dicomweb | 5 | {covid-19,imaging} |
phyutility | 5 | {bio,cloud} |
pymia | 5 | {imaging-dev} |
- rdp-alignment | 5 | {bio} |
- rdp-classifier | 5 | {bio} |
saint | 5 | {bio} |
sibsim4 | 5 | {bio,cloud} |
spread-phy | 5 | {bio-phylogeny,bio} |
stacks | 5 | {bio} |
vtk-dicom | 5 | {imaging} |
- zalign | 5 | {cloud,bio} |
alter-sequence-alignment | 4 | {bio} |
beast-mcmc | 4 | {bio,bio-phylogeny} |
+ ecopcr | 4 | {bio} |
elastix | 4 | {imaging} |
embassy-domainatrix | 4 | {cloud,bio} |
fastml | 4 | {bio} |
@@ -75,11 +71,10 @@ Last-Update: Fri, 18 Sep 2020 01:42:03 +0000
jellyfish1 | 4 | {bio} |
jmodeltest | 4 | {bio-phylogeny,bio} |
libpal-java | 4 | {bio-dev} |
+ librdp-taxonomy-tree-java | 4 | {bio-dev} |
metaphlan2 | 4 | {bio} |
mhap | 4 | {bio-ngs,bio} |
- nutsqlite | 4 | {tools} |
orthanc-postgresql | 4 | {imaging} |
- oscar | 4 | {data,practice,tools} |
paraclu | 4 | {bio,cloud} |
perm | 4 | {cloud,bio} |
phast | 4 | {bio} |
@@ -88,7 +83,10 @@ Last-Update: Fri, 18 Sep 2020 01:42:03 +0000
prime-phylo | 4 | {cloud,bio} |
proalign | 4 | {bio,bio-phylogeny} |
radiant | 4 | {bio} |
+ rdp-alignment | 4 | {bio} |
+ rdp-classifier | 4 | {bio} |
sprai | 4 | {bio} |
+ zalign | 4 | {cloud,bio} |
assemblytics | 3 | {bio} |
bio-tradis | 3 | {bio,bio-dev} |
bitseq | 3 | {bio} |
@@ -103,7 +101,9 @@ Last-Update: Fri, 18 Sep 2020 01:42:03 +0000
logol | 3 | {bio} |
mrs | 3 | {bio} |
murasaki | 3 | {bio} |
+ nutsqlite | 3 | {tools} |
orthanc-mysql | 3 | {imaging} |
+ oscar | 3 | {data,practice,tools} |
phybin | 3 | {bio} |
placnet | 3 | {bio} |
prottest | 3 | {bio,bio-phylogeny} |
@@ -123,6 +123,7 @@ Last-Update: Fri, 18 Sep 2020 01:42:03 +0000
biomaj3-daemon | 2 | {bio} |
canu | 2 | {bio} |
clonalframeml | 2 | {bio,covid-19} |
+ cufflinks | 2 | {bio,cloud} |
estscan | 2 | {bio} |
gatb-core | 2 | {bio-dev} |
getdata | 2 | {bio} |
@@ -133,7 +134,6 @@ Last-Update: Fri, 18 Sep 2020 01:42:03 +0000
patman | 2 | {bio} |
pbdagcon | 2 | {bio} |
qcumber | 2 | {bio} |
- relion | 2 | {bio} |
runcircos-gui | 2 | {bio} |
samtools-legacy | 2 | {bio-dev} |
segemehl | 2 | {bio} |
@@ -144,7 +144,6 @@ Last-Update: Fri, 18 Sep 2020 01:42:03 +0000
yaha | 2 | {bio} |
biosig4c++ | 1 | {physics,imaging-dev} |
cat-bat | 1 | {covid-19,bio} |
- cufflinks | 1 | {bio,cloud} |
delly | 1 | {covid-19,bio} |
dextractor | 1 | {bio,covid-19} |
embassy-phylip | 1 | {cloud,bio} |
@@ -154,12 +153,12 @@ Last-Update: Fri, 18 Sep 2020 01:42:03 +0000
libmaus2 | 1 | {covid-19,bio-dev} |
libseqlib | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- ngs-sdk | 1 | {bio-dev} |
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
pbcopper | 1 | {bio-dev} |
plasmidseeker | 1 | {bio} |
q2templates | 1 | {bio} |
+ relion | 1 | {bio} |
samblaster | 1 | {covid-19,bio} |
seqan | 1 | {bio-dev} |
sight | 1 | {imaging} |
@@ -216,6 +215,7 @@ Last-Update: Fri, 18 Sep 2020 01:42:03 +0000
milib | 0 | {covid-19,bio-dev} |
murasaki | 0 | {bio} |
nanosv | 0 | {bio,covid-19} |
+ ngs-sdk | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
@@ -225,8 +225,8 @@ Last-Update: Fri, 18 Sep 2020 01:42:03 +0000
pilercr | 0 | {bio} |
plasmidid | 0 | {bio,covid-19} |
pplacer | 0 | {covid-19,bio,bio-phylogeny} |
- relion | 0 | {bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
scrappie | 0 | {covid-19,bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/1d11ec4c8675473e3a4a31b184a5e7423cc9dcd0
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View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/1d11ec4c8675473e3a4a31b184a5e7423cc9dcd0
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